Variant report

Variant	rs17155855
Chromosome Location	chr10:6474731-6474732
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6473273..6475570-chr10:6476657..6479194,2	K562	blood:
2	chr10:6472528..6475094-chr10:6479400..6481457,2	K562	blood:
3	chr10:6473077..6475570-chr10:6476821..6479194,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10508308	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10752329	0.98[ASN][1000 genomes]
rs10752330	0.98[ASN][1000 genomes]
rs10906504	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11258500	0.85[CEU][hapmap]
rs11258501	0.85[CEU][hapmap]
rs11258515	0.88[ASN][1000 genomes]
rs11258589	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11258612	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11258967	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11596750	0.89[JPT][hapmap]
rs12572911	0.85[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs12770464	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12775595	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12780187	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17155850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236380	0.89[JPT][hapmap]
rs2296125	0.85[CEU][hapmap]
rs34316142	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35935618	0.88[ASN][1000 genomes]
rs3793722	0.88[JPT][hapmap]
rs3793724	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3793725	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3793726	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3793730	1.00[YRI][hapmap]
rs4237436	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4750422	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs590467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631968	0.89[JPT][hapmap]
rs6602745	1.00[YRI][hapmap]
rs681071	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs686333	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs688853	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs71479777	0.88[ASN][1000 genomes]
rs7893745	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7898408	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910745	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7911478	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7918923	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs961203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633784	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3377485	chr10:6471246-6475544	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6452600-6478600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:6452600-6481400	Weak transcription	Brain Substantia Nigra	brain
3	chr10:6456200-6496600	Weak transcription	Pancreas	Pancrea
4	chr10:6460600-6481200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:6464200-6487200	Strong transcription	Fetal Thymus	thymus
6	chr10:6464400-6485800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:6464600-6490600	Strong transcription	Primary T cells from cord blood	blood
8	chr10:6464800-6487400	Strong transcription	Thymus	Thymus
9	chr10:6465800-6481000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:6465800-6486600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:6465800-6496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:6465800-6496600	Weak transcription	Psoas Muscle	Psoas
13	chr10:6465800-6501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:6466000-6475000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:6466000-6486600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:6466400-6487800	Weak transcription	Fetal Stomach	stomach
17	chr10:6467000-6487200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr10:6467400-6496200	Weak transcription	Lung	lung
19	chr10:6467600-6481000	Weak transcription	Fetal Intestine Small	intestine
20	chr10:6467600-6487600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:6467800-6486000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:6467800-6487000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:6467800-6487400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:6467800-6487600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:6468000-6483800	Weak transcription	K562	blood
26	chr10:6468000-6487600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr10:6468000-6487800	Weak transcription	Brain Angular Gyrus	brain
28	chr10:6468200-6496800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:6468400-6477600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:6468400-6478800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:6468400-6484600	Weak transcription	Spleen	Spleen
32	chr10:6469200-6477400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:6469200-6479400	Strong transcription	Dnd41	blood
34	chr10:6469800-6484000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:6470200-6480600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:6470200-6483400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:6470800-6475400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:6471200-6475600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:6471200-6490200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:6472800-6475600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:6473000-6480600	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:6473200-6477000	Weak transcription	Adipose Nuclei	Adipose
43	chr10:6473400-6478600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:6473600-6476800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:6473600-6477200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:6473600-6478400	Weak transcription	Aorta	Aorta
47	chr10:6473600-6478400	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:6473600-6480600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:6473600-6483600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:6473600-6487800	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links