Variant report

Variant	rs3793724
Chromosome Location	chr10:6496928-6496929
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6496886..6498996-chr10:6631205..6633815,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10508307	0.94[ASN][1000 genomes]
rs10508308	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10906504	0.80[AMR][1000 genomes]
rs11258612	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11258967	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12770464	0.89[EUR][1000 genomes]
rs12775595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12780187	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155850	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17155855	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34316142	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3793725	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3793726	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4237436	0.80[AMR][1000 genomes]
rs590467	0.84[AMR][1000 genomes]
rs646613	0.83[EUR][1000 genomes]
rs681071	0.80[AMR][1000 genomes]
rs686333	0.87[EUR][1000 genomes]
rs688853	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7893745	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7898408	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7910745	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7911478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7918923	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs961203	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6465800-6501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:6477400-6503600	Weak transcription	Gastric	stomach
3	chr10:6480200-6501000	Weak transcription	Ovary	ovary
4	chr10:6480800-6497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:6481200-6500200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:6481400-6497800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:6488200-6497600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:6488200-6499600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:6488200-6500200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:6488200-6502000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:6488400-6500200	Weak transcription	Esophagus	oesophagus
12	chr10:6488400-6506800	Weak transcription	K562	blood
13	chr10:6490000-6497800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:6490400-6497600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:6493400-6516200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:6493600-6501200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:6496000-6498600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:6496000-6499000	Strong transcription	Fetal Thymus	thymus
19	chr10:6496000-6500200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:6496000-6502800	Strong transcription	Dnd41	blood
21	chr10:6496000-6508200	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:6496200-6497000	Strong transcription	Primary hematopoietic stem cells	blood
23	chr10:6496200-6497200	ZNF genes & repeats	Aorta	Aorta
24	chr10:6496200-6497200	ZNF genes & repeats	Lung	lung
25	chr10:6496200-6497400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:6496200-6497600	ZNF genes & repeats	Primary T cells from cord blood	blood
27	chr10:6496200-6498600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr10:6496200-6498600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:6496200-6498800	Strong transcription	Brain Substantia Nigra	brain
30	chr10:6496200-6499400	Strong transcription	Thymus	Thymus
31	chr10:6496200-6499600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:6496200-6500400	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:6496200-6500600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:6496200-6500800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:6496200-6501000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:6496200-6501600	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr10:6496200-6501600	Strong transcription	Fetal Muscle Leg	muscle
38	chr10:6496200-6502000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:6496200-6502800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr10:6496200-6506200	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:6496200-6508200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr10:6496200-6509000	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr10:6496200-6511600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
44	chr10:6496200-6513000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:6496200-6514000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr10:6496200-6514200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:6496200-6514600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:6496400-6499000	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr10:6496400-6499200	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:6496400-6499200	Strong transcription	Brain Angular Gyrus	brain

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