Variant report

Variant	rs9633784
Chromosome Location	chr10:6453002-6453003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6447268..6450081-chr10:6450323..6453408,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10752329	0.92[ASN][1000 genomes]
rs10752330	0.92[ASN][1000 genomes]
rs10906504	0.92[ASN][1000 genomes]
rs11258500	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11258501	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11258515	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11258589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11258612	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12572911	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17155850	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17155855	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2296125	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34316142	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35935618	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237436	0.92[ASN][1000 genomes]
rs4750422	0.92[ASN][1000 genomes]
rs590467	0.90[ASN][1000 genomes]
rs681071	0.92[ASN][1000 genomes]
rs686333	0.92[ASN][1000 genomes]
rs71479777	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7898408	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs961203	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6450600-6454000	Enhancers	Fetal Lung	lung
2	chr10:6451400-6453600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:6451600-6453200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr10:6451600-6453200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:6451600-6453400	Enhancers	Colon Smooth Muscle	Colon
6	chr10:6451600-6453800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:6451800-6453800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:6451800-6453800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:6451800-6453800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:6452200-6453400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:6452200-6468200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:6452400-6453200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr10:6452400-6453200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:6452400-6453200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr10:6452400-6453200	Enhancers	Dnd41	blood
16	chr10:6452400-6453400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:6452400-6453400	Enhancers	Fetal Thymus	thymus
18	chr10:6452400-6453600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:6452400-6453600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:6452400-6454000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:6452400-6454200	Enhancers	Thymus	Thymus
22	chr10:6452600-6453600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:6452600-6454000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:6452600-6454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:6452600-6478600	Weak transcription	Brain Anterior Caudate	brain
26	chr10:6452600-6481400	Weak transcription	Brain Substantia Nigra	brain
27	chr10:6452800-6457200	Weak transcription	Right Ventricle	heart
28	chr10:6452800-6464400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:6452800-6464600	Weak transcription	Primary T cells from cord blood	blood
30	chr10:6453000-6465600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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