Variant report

Variant	rs6468265
Chromosome Location	chr8:34371604-34371605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10107624	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10111768	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12114700	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12545278	0.81[ASN][1000 genomes]
rs12547489	0.81[ASN][1000 genomes]
rs1445184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16882360	0.87[ASN][1000 genomes]
rs1822864	0.87[ASN][1000 genomes]
rs2044355	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2166231	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28366982	0.87[ASN][1000 genomes]
rs28795079	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2896967	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4144954	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4237089	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4400387	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4463416	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4534132	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4584143	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4739580	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4739582	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4739589	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55787309	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56406211	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66516829	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66892402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6984972	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6991355	0.87[ASN][1000 genomes]
rs7827353	0.87[ASN][1000 genomes]
rs7833514	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7833602	0.89[ASN][1000 genomes]
rs7844647	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9297220	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs953271	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847298	chr8:34356954-34376347	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
2	esv3428603	chr8:34367445-34422532	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6468265	RAB11FIP1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34371400-34371800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:34371400-34371800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:34371600-34372800	Enhancers	Fetal Heart	heart

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