Variant report

Variant	rs55787309
Chromosome Location	chr8:34411649-34411650
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10107624	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111768	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10503965	0.87[ASN][1000 genomes]
rs12114700	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12543513	0.87[ASN][1000 genomes]
rs12543518	0.87[ASN][1000 genomes]
rs12543568	0.87[ASN][1000 genomes]
rs12545278	0.89[ASN][1000 genomes]
rs12546023	0.87[ASN][1000 genomes]
rs12547489	0.89[ASN][1000 genomes]
rs1445184	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16882360	0.80[ASN][1000 genomes]
rs16882701	0.87[ASN][1000 genomes]
rs16882703	0.86[ASN][1000 genomes]
rs1822864	0.80[ASN][1000 genomes]
rs2044355	0.81[ASN][1000 genomes]
rs2166231	0.81[ASN][1000 genomes]
rs28366982	0.80[ASN][1000 genomes]
rs28540657	0.81[ASN][1000 genomes]
rs28795079	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35008961	0.87[ASN][1000 genomes]
rs4144954	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4237089	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4263763	0.87[ASN][1000 genomes]
rs4400387	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4463416	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4534132	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4584143	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4739580	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739582	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4739589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56406211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59950658	0.87[ASN][1000 genomes]
rs6468265	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66516829	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66892402	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6984972	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6991355	0.80[ASN][1000 genomes]
rs7827353	0.80[ASN][1000 genomes]
rs7829689	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7832131	0.91[EUR][1000 genomes]
rs7833514	0.81[ASN][1000 genomes]
rs7833602	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844647	0.90[ASN][1000 genomes]
rs9297220	0.81[ASN][1000 genomes]
rs953271	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428603	chr8:34367445-34422532	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34411600-34412000	Enhancers	Stomach Mucosa	stomach

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