Variant report

Variant	rs6470149
Chromosome Location	chr8:124449080-124449081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124440656..124442795-chr8:124447667..124450310,2	K562	blood:
2	chr8:124444487..124447006-chr8:124447835..124450381,2	K562	blood:

Variant related genes	Relation type
ENSG00000156795	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10216826	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10956129	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12234925	0.80[CEU][hapmap]
rs4871375	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4871381	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470148	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7005105	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9297669	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124430000-124449200	Weak transcription	Small Intestine	intestine
2	chr8:124430000-124450200	Weak transcription	Brain Germinal Matrix	brain
3	chr8:124430200-124449200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:124430200-124449200	Weak transcription	HUVEC	blood vessel
5	chr8:124430200-124455400	Weak transcription	Fetal Kidney	kidney
6	chr8:124430200-124456000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:124430200-124472800	Weak transcription	Colonic Mucosa	Colon
8	chr8:124430200-124484600	Weak transcription	Psoas Muscle	Psoas
9	chr8:124430400-124449200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:124430400-124453000	Weak transcription	Fetal Lung	lung
11	chr8:124430600-124461800	Weak transcription	Fetal Brain Male	brain
12	chr8:124431000-124450000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:124431200-124460200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr8:124431200-124462200	Weak transcription	Fetal Heart	heart
15	chr8:124436600-124464400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:124437600-124462400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:124439000-124451200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:124439400-124453600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:124439800-124451600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:124440000-124453600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:124440200-124454200	Strong transcription	Dnd41	blood
22	chr8:124440400-124453200	Strong transcription	Fetal Intestine Small	intestine
23	chr8:124440600-124450800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr8:124440600-124454200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr8:124440600-124454400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr8:124440600-124456200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:124441000-124449200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:124441000-124454400	Strong transcription	HepG2	liver
29	chr8:124441400-124460200	Weak transcription	Stomach Mucosa	stomach
30	chr8:124441600-124449800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr8:124441600-124461600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:124441600-124462600	Weak transcription	Colon Smooth Muscle	Colon
33	chr8:124441800-124449200	Weak transcription	K562	blood
34	chr8:124442200-124454200	Strong transcription	Stomach Smooth Muscle	stomach
35	chr8:124442600-124450200	Weak transcription	HMEC	breast
36	chr8:124442600-124458600	Weak transcription	Hela-S3	cervix
37	chr8:124443600-124451400	Strong transcription	Ovary	ovary
38	chr8:124443600-124454600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr8:124443800-124454600	Strong transcription	Primary T cells from cord blood	blood
40	chr8:124444000-124449800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:124444000-124453800	Weak transcription	Placenta	Placenta
42	chr8:124444200-124453000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr8:124444400-124449400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr8:124444400-124449400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr8:124444400-124449400	Weak transcription	Aorta	Aorta
46	chr8:124444400-124449400	Weak transcription	Esophagus	oesophagus
47	chr8:124444400-124449400	Weak transcription	Gastric	stomach
48	chr8:124444400-124449600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:124444400-124449800	Weak transcription	Right Ventricle	heart
50	chr8:124444400-124450000	Weak transcription	HSMMtube	muscle

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