Variant report

Variant	rs10216826
Chromosome Location	chr8:124468471-124468472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124459866..124461765-chr8:124465960..124468688,3	K562	blood:
2	chr8:124427974..124429671-chr8:124466640..124468871,2	K562	blood:
3	chr8:124404859..124406391-chr8:124468383..124470520,2	K562	blood:
4	chr8:124464160..124465967-chr8:124466531..124468850,2	MCF-7	breast:
5	chr8:124466315..124468864-chr8:124475484..124478441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156802	Chromatin interaction
ENSG00000156795	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10087527	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089561	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110826	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956124	1.00[CHB][hapmap]
rs10956129	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956138	1.00[CHB][hapmap]
rs12234925	0.80[CEU][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547295	1.00[CHB][hapmap]
rs16898247	1.00[CHB][hapmap]
rs17254013	1.00[CHB][hapmap]
rs1817527	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2891717	1.00[CHB][hapmap]
rs35680076	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3857956	1.00[CHB][hapmap]
rs4541891	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871365	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871376	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871379	0.90[EUR][1000 genomes]
rs4871381	0.90[EUR][1000 genomes]
rs6470148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470149	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6470151	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984935	0.83[EUR][1000 genomes]
rs6989927	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6998407	1.00[CHB][hapmap]
rs7004908	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341642	0.89[EUR][1000 genomes]
rs7822727	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838103	1.00[CHB][hapmap]
rs7838923	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841922	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900628	1.00[CHB][hapmap]
rs9297669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124430200-124472800	Weak transcription	Colonic Mucosa	Colon
2	chr8:124430200-124484600	Weak transcription	Psoas Muscle	Psoas
3	chr8:124449600-124490800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:124451400-124489400	Weak transcription	Spleen	Spleen
5	chr8:124454000-124472800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:124454000-124478400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:124454000-124489400	Weak transcription	Gastric	stomach
8	chr8:124454400-124478200	Weak transcription	HSMM	muscle
9	chr8:124454400-124478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:124454400-124478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:124454600-124477200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:124454600-124489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:124454600-124489200	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:124456200-124472400	Weak transcription	Fetal Intestine Small	intestine
15	chr8:124459000-124472400	Weak transcription	HUVEC	blood vessel
16	chr8:124459200-124468600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:124459200-124472200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:124459200-124473200	Weak transcription	HepG2	liver
19	chr8:124459200-124473800	Weak transcription	Primary B cells from cord blood	blood
20	chr8:124460400-124468600	Weak transcription	Fetal Brain Female	brain
21	chr8:124460400-124472800	Weak transcription	Fetal Intestine Large	intestine
22	chr8:124460400-124472800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr8:124460400-124473000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:124460400-124478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:124461200-124490200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:124461400-124469600	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:124461400-124476600	Weak transcription	Lung	lung
28	chr8:124461400-124478200	Weak transcription	Aorta	Aorta
29	chr8:124461400-124482200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:124461600-124472200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:124461600-124477600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:124461600-124486400	Weak transcription	A549	lung
33	chr8:124463400-124472000	Weak transcription	Fetal Thymus	thymus
34	chr8:124464000-124468600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:124464000-124478200	Weak transcription	Ovary	ovary
36	chr8:124464200-124477600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:124464200-124478200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:124464200-124478400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr8:124464400-124468800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:124464400-124478400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:124464400-124483400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr8:124465600-124468600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr8:124465600-124488800	Weak transcription	Primary T cells from cord blood	blood
44	chr8:124466200-124469000	Weak transcription	HMEC	breast
45	chr8:124466400-124472200	Weak transcription	Pancreas	Pancrea
46	chr8:124466400-124474800	Weak transcription	Fetal Heart	heart
47	chr8:124466600-124477600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr8:124467200-124473200	Weak transcription	Left Ventricle	heart
49	chr8:124467600-124473000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr8:124467600-124478400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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