Variant report

Variant	rs6998407
Chromosome Location	chr8:124378703-124378704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10102371	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10105355	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216826	1.00[CHB][hapmap]
rs10956124	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11774610	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11985341	1.00[CEU][hapmap]
rs16898127	1.00[CEU][hapmap]
rs16898165	1.00[CEU][hapmap]
rs16898247	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28693459	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891717	1.00[CHB][hapmap];0.82[LWK][hapmap];1.00[ASN][1000 genomes]
rs3857956	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4871356	0.81[AFR][1000 genomes]
rs4871375	1.00[CHB][hapmap]
rs59697406	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470148	1.00[CHB][hapmap]
rs6989437	1.00[CEU][hapmap]
rs6996427	1.00[CEU][hapmap]
rs7000034	1.00[ASN][1000 genomes]
rs7000925	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs7005105	1.00[CHB][hapmap]
rs73341743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73703793	1.00[ASN][1000 genomes]
rs73703796	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73703800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835285	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844363	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs900628	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297669	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv891428	chr8:124347228-124386782	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124325000-124379400	Weak transcription	Right Ventricle	heart
2	chr8:124328400-124386400	Weak transcription	Lung	lung
3	chr8:124329000-124379600	Weak transcription	Pancreas	Pancrea
4	chr8:124329400-124385000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:124329600-124384200	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:124329800-124394200	Strong transcription	Dnd41	blood
7	chr8:124330200-124386400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:124330400-124383200	Weak transcription	Colonic Mucosa	Colon
9	chr8:124330400-124393400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:124330400-124394600	Strong transcription	Fetal Thymus	thymus
11	chr8:124330600-124393000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:124331600-124383800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:124333000-124387600	Weak transcription	Fetal Brain Male	brain
14	chr8:124334400-124378800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:124335200-124398600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:124335600-124398600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:124336400-124384200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:124341600-124406800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:124342800-124388000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr8:124344400-124386600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:124345600-124396400	Weak transcription	Psoas Muscle	Psoas
22	chr8:124348600-124398400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:124349400-124398200	Weak transcription	Aorta	Aorta
24	chr8:124350000-124379400	Weak transcription	Fetal Kidney	kidney
25	chr8:124350200-124393400	Weak transcription	Small Intestine	intestine
26	chr8:124350200-124396400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr8:124350400-124382800	Weak transcription	Brain Anterior Caudate	brain
28	chr8:124361200-124384800	Strong transcription	K562	blood
29	chr8:124362000-124385800	Strong transcription	HepG2	liver
30	chr8:124363200-124384400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:124363400-124385600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr8:124363800-124381000	Weak transcription	Fetal Heart	heart
33	chr8:124366400-124389400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:124367000-124384200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:124367000-124385200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr8:124367000-124391800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr8:124367200-124384600	Strong transcription	Liver	Liver
38	chr8:124367200-124385400	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:124367200-124390000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:124367600-124384800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr8:124367600-124385200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr8:124368000-124393400	Weak transcription	Stomach Mucosa	stomach
43	chr8:124369600-124386800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr8:124369800-124385600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr8:124370000-124381200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr8:124371000-124379400	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:124372400-124383200	Weak transcription	NH-A	brain
48	chr8:124373400-124379600	Weak transcription	Esophagus	oesophagus
49	chr8:124373400-124379600	Weak transcription	NHLF	lung
50	chr8:124373400-124387200	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links