Variant report

Variant	rs73341743
Chromosome Location	chr8:124323264-124323265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124286388..124289082-chr8:124320629..124323518,3	MCF-7	breast:
2	chr8:124317547..124319918-chr8:124321163..124323544,2	K562	blood:
3	chr8:124285999..124287904-chr8:124322973..124324502,2	K562	blood:
4	chr8:124285603..124288746-chr8:124320695..124324682,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165156	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10102371	0.85[EUR][1000 genomes]
rs10105355	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956124	1.00[ASN][1000 genomes]
rs11774610	1.00[ASN][1000 genomes]
rs16898247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28693459	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891717	1.00[ASN][1000 genomes]
rs3857956	1.00[ASN][1000 genomes]
rs4489325	1.00[ASN][1000 genomes]
rs57815619	1.00[ASN][1000 genomes]
rs59697406	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520599	1.00[ASN][1000 genomes]
rs62520600	1.00[ASN][1000 genomes]
rs62520601	1.00[ASN][1000 genomes]
rs62521769	1.00[ASN][1000 genomes]
rs62521770	1.00[ASN][1000 genomes]
rs62521771	1.00[ASN][1000 genomes]
rs62521772	1.00[ASN][1000 genomes]
rs62521773	1.00[ASN][1000 genomes]
rs62521775	1.00[ASN][1000 genomes]
rs62521778	1.00[ASN][1000 genomes]
rs6998407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000034	1.00[ASN][1000 genomes]
rs73337868	1.00[ASN][1000 genomes]
rs73337885	1.00[ASN][1000 genomes]
rs73337894	1.00[ASN][1000 genomes]
rs73703793	1.00[ASN][1000 genomes]
rs73703796	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73703800	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844363	1.00[ASN][1000 genomes]
rs900628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124321600-124331000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:124321600-124334000	Weak transcription	Ovary	ovary
3	chr8:124322200-124323400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:124322400-124323400	Enhancers	HMEC	breast
5	chr8:124322400-124323400	Flanking Active TSS	NHEK	skin
6	chr8:124322600-124334400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr8:124322800-124323400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:124322800-124323600	Enhancers	Hela-S3	cervix
9	chr8:124322800-124323800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:124323000-124323400	Enhancers	Adipose Nuclei	Adipose
11	chr8:124323000-124323400	Enhancers	GM12878-XiMat	blood
12	chr8:124323000-124331600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:124323200-124323400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr8:124323200-124324000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:124323200-124324400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:124323200-124347000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links