Variant report

Variant	rs7844363
Chromosome Location	chr8:124406105-124406106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124359709..124361530-chr8:124404900..124407817,2	MCF-7	breast:
2	chr8:124406056..124410111-chr8:124427174..124433258,8	MCF-7	breast:
3	chr8:124405499..124410730-chr8:124426606..124431705,19	K562	blood:
4	chr8:124404859..124406391-chr8:124468383..124470520,2	K562	blood:
5	chr8:124404505..124411576-chr8:124423647..124430734,19	MCF-7	breast:
6	chr8:124286480..124288800-chr8:124405450..124407070,2	K562	blood:
7	chr8:124283412..124288800-chr8:124404176..124410687,11	K562	blood:
8	chr8:124283826..124290020-chr8:124406062..124410538,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000156795	Chromatin interaction
ENSG00000165156	Chromatin interaction
ENSG00000207704	Chromatin interaction
ENSG00000156802	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10105355	1.00[ASN][1000 genomes]
rs10956124	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774610	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898247	1.00[ASN][1000 genomes]
rs28693459	1.00[ASN][1000 genomes]
rs2891717	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857956	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871356	0.88[AMR][1000 genomes]
rs59697406	1.00[ASN][1000 genomes]
rs6998407	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7000034	1.00[ASN][1000 genomes]
rs73341743	1.00[ASN][1000 genomes]
rs73703793	1.00[ASN][1000 genomes]
rs73703796	1.00[ASN][1000 genomes]
rs73703800	1.00[ASN][1000 genomes]
rs7835285	1.00[ASN][1000 genomes]
rs7838103	1.00[ASN][1000 genomes]
rs900628	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124341600-124406800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:124374000-124406800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:124374400-124407000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:124379000-124407200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:124385200-124407400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:124387800-124406600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:124389000-124407200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:124390200-124407200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:124394200-124406600	Weak transcription	Small Intestine	intestine
10	chr8:124394400-124407000	Weak transcription	Fetal Intestine Large	intestine
11	chr8:124395000-124407000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr8:124397000-124406800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr8:124397000-124407000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:124397000-124407000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:124397000-124407200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:124398800-124406800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr8:124398800-124407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:124398800-124407000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr8:124399000-124407000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:124399000-124407000	Weak transcription	Fetal Kidney	kidney
21	chr8:124399000-124407200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:124399200-124407000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:124399200-124407200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr8:124399200-124407200	Weak transcription	Fetal Brain Male	brain
25	chr8:124399800-124406800	Weak transcription	Fetal Muscle Leg	muscle
26	chr8:124399800-124407000	Weak transcription	Brain Anterior Caudate	brain
27	chr8:124400000-124406200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr8:124400000-124406400	Weak transcription	Brain Angular Gyrus	brain
29	chr8:124400000-124406600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:124400000-124406800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr8:124400000-124406800	Weak transcription	Primary B cells from cord blood	blood
32	chr8:124400000-124407000	Weak transcription	NH-A	brain
33	chr8:124400200-124406800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:124400200-124407000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr8:124400400-124406400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr8:124400400-124406600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr8:124400400-124406800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr8:124400400-124407000	Weak transcription	Primary T cells from cord blood	blood
39	chr8:124400400-124407000	Weak transcription	NHLF	lung
40	chr8:124400400-124407200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr8:124400600-124406600	Weak transcription	Liver	Liver
42	chr8:124400800-124406400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:124400800-124406400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr8:124400800-124407200	Weak transcription	Right Atrium	heart
45	chr8:124400800-124407400	Weak transcription	Gastric	stomach
46	chr8:124401200-124406600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:124401400-124407400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr8:124401800-124406400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr8:124401800-124406800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr8:124402400-124408600	Transcr. at gene 5' and 3'	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links