Variant report

Variant	rs73703796
Chromosome Location	chr8:124300996-124300997
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124285744..124288739-chr8:124298222..124302489,4	K562	blood:
2	chr8:124252177..124254741-chr8:124300569..124303262,2	MCF-7	breast:
3	chr8:124293796..124296347-chr8:124300801..124302513,2	MCF-7	breast:
4	chr8:124284678..124290463-chr8:124295890..124302199,8	K562	blood:

Variant related genes	Relation type
ENSG00000165156	Chromatin interaction
ENSG00000189376	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10102371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956124	1.00[ASN][1000 genomes]
rs11774610	1.00[ASN][1000 genomes]
rs11994660	0.81[AFR][1000 genomes]
rs16898247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28693459	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891717	1.00[ASN][1000 genomes]
rs3857956	1.00[ASN][1000 genomes]
rs4489325	1.00[ASN][1000 genomes]
rs4871356	0.82[AFR][1000 genomes]
rs57815619	1.00[ASN][1000 genomes]
rs59697406	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61288481	0.94[AFR][1000 genomes]
rs62520595	1.00[ASN][1000 genomes]
rs62520596	1.00[ASN][1000 genomes]
rs62520599	1.00[ASN][1000 genomes]
rs62520600	1.00[ASN][1000 genomes]
rs62520601	1.00[ASN][1000 genomes]
rs62521769	1.00[ASN][1000 genomes]
rs62521770	1.00[ASN][1000 genomes]
rs62521771	1.00[ASN][1000 genomes]
rs62521772	1.00[ASN][1000 genomes]
rs62521773	1.00[ASN][1000 genomes]
rs62521775	1.00[ASN][1000 genomes]
rs62521778	1.00[ASN][1000 genomes]
rs6998407	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000034	1.00[ASN][1000 genomes]
rs7000925	0.95[AFR][1000 genomes]
rs73337868	1.00[ASN][1000 genomes]
rs73337885	1.00[ASN][1000 genomes]
rs73337894	1.00[ASN][1000 genomes]
rs73341743	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73703793	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73703800	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835285	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838103	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844363	1.00[ASN][1000 genomes]
rs900628	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124287800-124301200	Weak transcription	Esophagus	oesophagus
2	chr8:124295400-124301800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:124298000-124303400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:124298600-124301600	Weak transcription	NHEK	skin
5	chr8:124298600-124302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:124298800-124302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:124300600-124302400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:124300600-124302800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:124300800-124301400	Enhancers	Brain Anterior Caudate	brain

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