Variant report

Variant	rs7822727
Chromosome Location	chr8:124464908-124464909
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124463936..124466421-chr8:124769993..124771838,2	K562	blood:
2	chr8:124464160..124465967-chr8:124466531..124468850,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10087527	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089561	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10110826	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216826	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956129	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12234925	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1817527	0.81[AMR][1000 genomes]
rs35680076	0.90[AMR][1000 genomes]
rs4541891	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871365	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4871375	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871376	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871379	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4871381	0.83[EUR][1000 genomes]
rs6470148	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470151	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989927	0.81[AMR][1000 genomes]
rs7004908	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005105	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341642	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7838923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841922	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9297669	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124430200-124472800	Weak transcription	Colonic Mucosa	Colon
2	chr8:124430200-124484600	Weak transcription	Psoas Muscle	Psoas
3	chr8:124445600-124465400	Weak transcription	Pancreas	Pancrea
4	chr8:124447600-124467800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:124449600-124490800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:124451400-124489400	Weak transcription	Spleen	Spleen
7	chr8:124452000-124467400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:124454000-124465000	Weak transcription	Brain Angular Gyrus	brain
9	chr8:124454000-124467400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:124454000-124467800	Weak transcription	Esophagus	oesophagus
11	chr8:124454000-124468200	Weak transcription	NHLF	lung
12	chr8:124454000-124472800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr8:124454000-124478400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:124454000-124489400	Weak transcription	Gastric	stomach
15	chr8:124454200-124465400	Weak transcription	Brain Substantia Nigra	brain
16	chr8:124454200-124465400	Weak transcription	HSMMtube	muscle
17	chr8:124454400-124467600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:124454400-124478200	Weak transcription	HSMM	muscle
19	chr8:124454400-124478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:124454400-124478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:124454600-124465200	Weak transcription	Placenta	Placenta
22	chr8:124454600-124467800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:124454600-124468400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr8:124454600-124477200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:124454600-124489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr8:124454600-124489200	Weak transcription	Brain Hippocampus Middle	brain
27	chr8:124455000-124466600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:124456200-124472400	Weak transcription	Fetal Intestine Small	intestine
29	chr8:124459000-124472400	Weak transcription	HUVEC	blood vessel
30	chr8:124459200-124465800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr8:124459200-124466000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr8:124459200-124466800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr8:124459200-124467000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:124459200-124468600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:124459200-124472200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:124459200-124473200	Weak transcription	HepG2	liver
37	chr8:124459200-124473800	Weak transcription	Primary B cells from cord blood	blood
38	chr8:124459400-124465200	Weak transcription	Hela-S3	cervix
39	chr8:124460400-124468400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr8:124460400-124468600	Weak transcription	Fetal Brain Female	brain
41	chr8:124460400-124472800	Weak transcription	Fetal Intestine Large	intestine
42	chr8:124460400-124472800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr8:124460400-124473000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr8:124460400-124478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:124460600-124466000	Weak transcription	Liver	Liver
46	chr8:124461000-124465000	Weak transcription	Thymus	Thymus
47	chr8:124461000-124466400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:124461200-124465200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:124461200-124465400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:124461200-124466200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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