Variant report

Variant	rs7341642
Chromosome Location	chr8:124464083-124464084
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124463936..124466421-chr8:124769993..124771838,2	K562	blood:
2	chr8:124442147..124444200-chr8:124462793..124464378,2	K562	blood:
3	chr8:124442700..124445613-chr8:124461517..124464378,2	K562	blood:

Variant related genes	Relation type
ENSG00000156795	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10087527	0.89[EUR][1000 genomes]
rs10110826	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10216826	0.89[EUR][1000 genomes]
rs10956129	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12234925	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4541891	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4871375	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4871376	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4871381	0.80[EUR][1000 genomes]
rs6470148	0.89[EUR][1000 genomes]
rs6470151	0.89[EUR][1000 genomes]
rs7005105	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7822727	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7838923	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9297669	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7341642	C8orf32	cis	multi-tissue	Pritchard

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124430200-124472800	Weak transcription	Colonic Mucosa	Colon
2	chr8:124430200-124484600	Weak transcription	Psoas Muscle	Psoas
3	chr8:124436600-124464400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:124445600-124465400	Weak transcription	Pancreas	Pancrea
5	chr8:124447600-124467800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:124449600-124490800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:124451400-124489400	Weak transcription	Spleen	Spleen
8	chr8:124452000-124467400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:124453600-124464800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:124454000-124465000	Weak transcription	Brain Angular Gyrus	brain
11	chr8:124454000-124467400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:124454000-124467800	Weak transcription	Esophagus	oesophagus
13	chr8:124454000-124468200	Weak transcription	NHLF	lung
14	chr8:124454000-124472800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:124454000-124478400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:124454000-124489400	Weak transcription	Gastric	stomach
17	chr8:124454200-124465400	Weak transcription	Brain Substantia Nigra	brain
18	chr8:124454200-124465400	Weak transcription	HSMMtube	muscle
19	chr8:124454400-124467600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:124454400-124478200	Weak transcription	HSMM	muscle
21	chr8:124454400-124478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:124454400-124478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr8:124454600-124465200	Weak transcription	Placenta	Placenta
24	chr8:124454600-124467800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:124454600-124468400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:124454600-124477200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:124454600-124489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr8:124454600-124489200	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:124455000-124466600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:124456200-124472400	Weak transcription	Fetal Intestine Small	intestine
31	chr8:124459000-124472400	Weak transcription	HUVEC	blood vessel
32	chr8:124459200-124464600	Weak transcription	GM12878-XiMat	blood
33	chr8:124459200-124465800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr8:124459200-124466000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr8:124459200-124466800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr8:124459200-124467000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr8:124459200-124468600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:124459200-124472200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:124459200-124473200	Weak transcription	HepG2	liver
40	chr8:124459200-124473800	Weak transcription	Primary B cells from cord blood	blood
41	chr8:124459400-124465200	Weak transcription	Hela-S3	cervix
42	chr8:124460200-124464200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr8:124460400-124468400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr8:124460400-124468600	Weak transcription	Fetal Brain Female	brain
45	chr8:124460400-124472800	Weak transcription	Fetal Intestine Large	intestine
46	chr8:124460400-124472800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr8:124460400-124473000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr8:124460400-124478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:124460600-124466000	Weak transcription	Liver	Liver
50	chr8:124460800-124464200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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