Variant report

Variant	rs4871381
Chromosome Location	chr8:124472858-124472859
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10087527	0.90[EUR][1000 genomes]
rs10110826	0.89[EUR][1000 genomes]
rs10216826	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs10956129	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12234925	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs4541891	0.90[EUR][1000 genomes]
rs4871375	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs4871376	0.90[EUR][1000 genomes]
rs4871379	0.81[EUR][1000 genomes]
rs6470148	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6470149	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470151	0.90[EUR][1000 genomes]
rs6984935	0.92[EUR][1000 genomes]
rs7004908	0.81[EUR][1000 genomes]
rs7005105	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs7341642	0.80[EUR][1000 genomes]
rs7822727	0.83[EUR][1000 genomes]
rs7838923	0.89[EUR][1000 genomes]
rs9297669	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124430200-124484600	Weak transcription	Psoas Muscle	Psoas
2	chr8:124449600-124490800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:124451400-124489400	Weak transcription	Spleen	Spleen
4	chr8:124454000-124478400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:124454000-124489400	Weak transcription	Gastric	stomach
6	chr8:124454400-124478200	Weak transcription	HSMM	muscle
7	chr8:124454400-124478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:124454400-124478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:124454600-124477200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:124454600-124489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:124454600-124489200	Weak transcription	Brain Hippocampus Middle	brain
12	chr8:124459200-124473200	Weak transcription	HepG2	liver
13	chr8:124459200-124473800	Weak transcription	Primary B cells from cord blood	blood
14	chr8:124460400-124473000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:124460400-124478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:124461200-124490200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:124461400-124476600	Weak transcription	Lung	lung
18	chr8:124461400-124478200	Weak transcription	Aorta	Aorta
19	chr8:124461400-124482200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:124461600-124477600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:124461600-124486400	Weak transcription	A549	lung
22	chr8:124464000-124478200	Weak transcription	Ovary	ovary
23	chr8:124464200-124477600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:124464200-124478200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:124464200-124478400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:124464400-124478400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:124464400-124483400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:124465600-124488800	Weak transcription	Primary T cells from cord blood	blood
29	chr8:124466400-124474800	Weak transcription	Fetal Heart	heart
30	chr8:124466600-124477600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr8:124467200-124473200	Weak transcription	Left Ventricle	heart
32	chr8:124467600-124473000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:124467600-124478400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:124468400-124473200	Weak transcription	Esophagus	oesophagus
35	chr8:124468400-124476600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:124468600-124473200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:124468600-124478600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr8:124468800-124481000	Weak transcription	NHEK	skin
39	chr8:124469000-124478200	Weak transcription	Adipose Nuclei	Adipose
40	chr8:124469000-124488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:124469200-124488000	Weak transcription	Dnd41	blood
42	chr8:124469400-124473400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:124469800-124473800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr8:124471800-124473200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:124472200-124473000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr8:124472200-124473000	Enhancers	Osteobl	bone
47	chr8:124472200-124473600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:124472200-124473600	Enhancers	Pancreas	Pancrea
49	chr8:124472200-124475400	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr8:124472400-124473000	Enhancers	NHLF	lung

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