Variant report

Variant	rs6471681
Chromosome Location	chr8:59001745-59001746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10108168	1.00[AMR][1000 genomes]
rs16922797	1.00[AMR][1000 genomes]
rs28615520	1.00[AMR][1000 genomes]
rs7015719	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58983400-59003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:58984000-59003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:58984600-59003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:58984600-59004200	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:58987400-59003600	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
7	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
8	chr8:58990000-59003800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:58990200-59003600	Weak transcription	Spleen	Spleen
10	chr8:58990400-59002200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:58990400-59003000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:58990400-59003400	Weak transcription	Fetal Brain Female	brain
13	chr8:58990400-59003600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:58990400-59003800	Weak transcription	Fetal Brain Male	brain
15	chr8:58990400-59004400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:58992000-59004800	Weak transcription	HSMMtube	muscle
17	chr8:58992000-59007000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:58992200-59010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:58993000-59003600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:58999800-59003200	Weak transcription	Fetal Heart	heart
21	chr8:58999800-59003400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:59000000-59003600	Weak transcription	Right Ventricle	heart
23	chr8:59000000-59010200	Weak transcription	HSMM	muscle
24	chr8:59000000-59010200	Weak transcription	NHDF-Ad	bronchial
25	chr8:59000000-59010800	Weak transcription	Fetal Lung	lung
26	chr8:59000200-59002200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:59000200-59003600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr8:59000200-59003600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr8:59000200-59003600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr8:59000200-59003600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr8:59000200-59003800	Weak transcription	Fetal Stomach	stomach
32	chr8:59000200-59003800	Weak transcription	Left Ventricle	heart
33	chr8:59000200-59005400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr8:59000200-59010400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:59000200-59010600	Weak transcription	Right Atrium	heart
36	chr8:59000400-59001800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:59000400-59001800	Enhancers	Liver	Liver
38	chr8:59000400-59003600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr8:59000400-59004000	Weak transcription	Fetal Muscle Leg	muscle
40	chr8:59000600-59003600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:59000600-59003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr8:59000800-59003600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:59001200-59001800	Enhancers	Fetal Kidney	kidney
44	chr8:59001200-59004600	Enhancers	Brain Germinal Matrix	brain
45	chr8:59001600-59002000	Enhancers	Cortex derived primary cultured neurospheres	brain

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