Variant report

Variant	rs6472232
Chromosome Location	chr8:66792632-66792633
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10098417	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10104877	0.84[CEU][hapmap]
rs11984566	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11984618	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11986470	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11988360	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11988712	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11991974	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11996694	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11996764	0.85[ASN][1000 genomes]
rs11997658	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11998618	0.85[ASN][1000 genomes]
rs12114319	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs16932411	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2357552	0.85[ASN][1000 genomes]
rs2357566	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];0.84[TSI][hapmap]
rs2357657	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2357663	0.92[JPT][hapmap]
rs28407694	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2884235	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs34653832	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3934466	0.88[ASN][1000 genomes]
rs4262311	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs4355757	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap]
rs4380924	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs4601292	0.88[ASN][1000 genomes]
rs56080166	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56389721	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60120959	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60258162	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6472236	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6472238	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6981354	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6983945	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6990319	0.85[ASN][1000 genomes]
rs6992002	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];0.84[TSI][hapmap]
rs6994725	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6996761	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6997496	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs7006789	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.84[TSI][hapmap]
rs7010679	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7017618	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7461470	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7465415	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7817474	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7841181	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66787600-66795800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:66791600-66794200	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:66791800-66793800	Enhancers	Primary B cells from cord blood	blood
4	chr8:66792400-66801000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:66792600-66792800	Weak transcription	GM12878-XiMat	blood

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