Variant report

Variant	rs6479532
Chromosome Location	chr9:97020521-97020522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97015612..97017858-chr9:97018523..97020622,2	MCF-7	breast:
2	chr9:97020053..97021567-chr9:97135095..97137937,2	MCF-7	breast:
3	chr9:97017106..97019746-chr9:97019872..97021495,2	K562	blood:

Variant related genes	Relation type
ENSG00000148110	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1310978	1.00[AMR][1000 genomes]
rs1769261	1.00[AMR][1000 genomes]
rs2094525	1.00[AMR][1000 genomes]
rs2768639	0.85[AMR][1000 genomes]
rs2790413	1.00[AMR][1000 genomes]
rs2987202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3118763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3118767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4578010	1.00[AMR][1000 genomes]
rs608328	1.00[AMR][1000 genomes]
rs7045634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7867660	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9409559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409561	1.00[AFR][1000 genomes]
rs9409563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409569	1.00[AMR][1000 genomes]
rs9409761	1.00[AMR][1000 genomes]
rs9409775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409781	1.00[AFR][1000 genomes]
rs9409782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
2	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
3	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1054784	chr9:96976419-97025515	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540174	chr9:96976419-97025515	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97013800-97020800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:97018000-97020800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr9:97019200-97020800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:97020200-97020600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:97020200-97020600	Enhancers	HepG2	liver
6	chr9:97020200-97021200	Enhancers	K562	blood
7	chr9:97020400-97020600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:97020400-97020600	Enhancers	Right Ventricle	heart
9	chr9:97020400-97021000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:97020400-97021000	Enhancers	Ovary	ovary
11	chr9:97020400-97021000	Enhancers	A549	lung
12	chr9:97020400-97021200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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