Variant report

Variant	rs7045634
Chromosome Location	chr9:97065173-97065174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97064666..97066438-chr9:97068084..97069601,2	K562	blood:
2	chr9:97021611..97023203-chr9:97065025..97066542,2	K562	blood:
3	chr9:97057093..97059981-chr9:97063795..97065484,2	K562	blood:
4	chr9:97062115..97063983-chr9:97064405..97066537,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1310978	1.00[AMR][1000 genomes]
rs1769261	1.00[AMR][1000 genomes]
rs2094525	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2768639	0.85[AMR][1000 genomes]
rs2772015	1.00[AMR][1000 genomes]
rs2790413	1.00[AMR][1000 genomes]
rs2987202	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3118763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3118767	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4578010	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs608328	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs6479532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs679726	1.00[AMR][1000 genomes]
rs7867660	1.00[AMR][1000 genomes]
rs9409559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409561	1.00[AFR][1000 genomes]
rs9409563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409569	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs9409761	1.00[AMR][1000 genomes]
rs9409775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409781	1.00[AFR][1000 genomes]
rs9409782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9409785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97039400-97067600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:97041200-97065400	Weak transcription	Small Intestine	intestine
3	chr9:97042600-97068400	Weak transcription	Fetal Brain Female	brain
4	chr9:97043800-97066400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:97055600-97066600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:97055600-97067800	Weak transcription	HepG2	liver
7	chr9:97055600-97068000	Weak transcription	Pancreas	Pancrea
8	chr9:97062800-97066200	Weak transcription	Fetal Brain Male	brain
9	chr9:97063000-97065200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:97063200-97066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:97063400-97065200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr9:97063400-97065200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:97063600-97065200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:97063600-97065200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:97063600-97065200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:97063600-97065200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:97063600-97065200	Weak transcription	Aorta	Aorta
18	chr9:97063600-97065200	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:97063600-97065200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr9:97063600-97065200	Weak transcription	Spleen	Spleen
21	chr9:97063600-97065200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:97063600-97065400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:97063600-97068200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:97063800-97065400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:97063800-97065400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:97064200-97067600	Weak transcription	Primary T cells from cord blood	blood
27	chr9:97064200-97068000	Weak transcription	Adipose Nuclei	Adipose
28	chr9:97064400-97065800	Enhancers	K562	blood
29	chr9:97064600-97066200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr9:97064800-97067400	Weak transcription	Primary B cells from cord blood	blood

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