Variant report

Variant	rs679726
Chromosome Location	chr9:97295804-97295805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1310978	1.00[AMR][1000 genomes]
rs1769261	1.00[AMR][1000 genomes]
rs2772015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2790413	1.00[AMR][1000 genomes]
rs2987202	1.00[AMR][1000 genomes]
rs2987884	0.84[EUR][1000 genomes]
rs2993965	0.81[EUR][1000 genomes]
rs4578010	1.00[AMR][1000 genomes]
rs507172	0.81[EUR][1000 genomes]
rs544467	0.84[EUR][1000 genomes]
rs608328	1.00[AMR][1000 genomes]
rs639498	0.84[EUR][1000 genomes]
rs667424	0.84[EUR][1000 genomes]
rs7045634	1.00[AMR][1000 genomes]
rs9409559	1.00[AMR][1000 genomes]
rs9409560	1.00[AMR][1000 genomes]
rs9409563	1.00[AMR][1000 genomes]
rs9409569	1.00[AMR][1000 genomes]
rs9409761	1.00[AMR][1000 genomes]
rs9409775	1.00[AMR][1000 genomes]
rs9409776	1.00[AMR][1000 genomes]
rs9409782	1.00[AMR][1000 genomes]
rs9409783	1.00[AMR][1000 genomes]
rs9409785	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525298	chr9:97289583-97312584	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97293800-97296200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:97295000-97297200	Enhancers	Fetal Intestine Large	intestine
3	chr9:97295000-97297200	Enhancers	Fetal Intestine Small	intestine
4	chr9:97295200-97296200	Flanking Active TSS	HepG2	liver
5	chr9:97295200-97296400	Enhancers	Liver	Liver
6	chr9:97295200-97297200	Enhancers	Fetal Kidney	kidney
7	chr9:97295400-97296000	Enhancers	Pancreas	Pancrea
8	chr9:97295400-97296000	Enhancers	A549	lung
9	chr9:97295400-97296200	Enhancers	Stomach Mucosa	stomach
10	chr9:97295800-97296000	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr9:97295800-97296000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr9:97295800-97296200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:97295800-97297400	Enhancers	Rectal Mucosa Donor 29	rectum

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