Variant report

Variant	rs7867660
Chromosome Location	chr9:97016564-97016565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97015612..97017858-chr9:97018523..97020622,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1310978	1.00[AMR][1000 genomes]
rs1769261	1.00[AMR][1000 genomes]
rs2094525	1.00[AMR][1000 genomes]
rs2768639	0.85[AMR][1000 genomes]
rs2790413	1.00[AMR][1000 genomes]
rs2987202	1.00[AMR][1000 genomes]
rs3118763	1.00[AMR][1000 genomes]
rs3118767	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4578010	1.00[AMR][1000 genomes]
rs608328	1.00[AMR][1000 genomes]
rs6479532	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7045634	1.00[AMR][1000 genomes]
rs9409559	1.00[AMR][1000 genomes]
rs9409560	1.00[AMR][1000 genomes]
rs9409563	1.00[AMR][1000 genomes]
rs9409569	1.00[AMR][1000 genomes]
rs9409761	1.00[AMR][1000 genomes]
rs9409775	1.00[AMR][1000 genomes]
rs9409776	1.00[AMR][1000 genomes]
rs9409782	1.00[AMR][1000 genomes]
rs9409783	1.00[AMR][1000 genomes]
rs9409785	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
2	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
3	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1054784	chr9:96976419-97025515	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540174	chr9:96976419-97025515	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97013800-97020800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:97015800-97016600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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