Variant report

Variant	rs6484659
Chromosome Location	chr11:33605932-33605933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33582088..33585071-chr11:33604919..33607475,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11828443	1.00[MEX][hapmap]
rs11828494	1.00[MEX][hapmap];0.85[YRI][hapmap]
rs12280523	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12291756	1.00[MEX][hapmap]
rs6484658	0.83[YRI][hapmap]
rs7115000	1.00[MEX][hapmap]
rs7115067	0.89[YRI][hapmap]
rs7121697	1.00[MEX][hapmap]
rs7945032	1.00[MEX][hapmap]
rs7948224	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529212	chr11:33053073-33641691	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv1041680	chr11:33249367-33637249	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv540997	chr11:33249367-33637249	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33555200-33617600	Weak transcription	Fetal Brain Male	brain
2	chr11:33568200-33606600	Weak transcription	HUVEC	blood vessel
3	chr11:33579600-33607000	Weak transcription	Osteobl	bone
4	chr11:33587000-33615400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:33587000-33615600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:33588200-33610600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:33591400-33615400	Weak transcription	A549	lung
8	chr11:33594600-33607200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:33594600-33608000	Weak transcription	Brain Anterior Caudate	brain
10	chr11:33594600-33615600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:33594600-33615600	Weak transcription	Brain Angular Gyrus	brain
12	chr11:33594600-33644000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:33598800-33606200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:33599200-33607400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:33599200-33615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:33599800-33606400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:33601600-33606200	Weak transcription	HSMMtube	muscle
18	chr11:33601800-33606200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:33603800-33609800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:33604200-33606200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:33604400-33608400	Strong transcription	Brain Germinal Matrix	brain
22	chr11:33604600-33606200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:33604600-33606200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:33604600-33606200	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr11:33604600-33606400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:33604600-33606600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:33604600-33610200	Strong transcription	Fetal Brain Female	brain
28	chr11:33605000-33606600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:33605200-33606000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:33605600-33606400	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr11:33605800-33607800	Strong transcription	NH-A	brain
32	chr11:33605800-33642400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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