Variant report

Variant	rs6485710
Chromosome Location	chr11:46934595-46934596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46933026..46934959-chr11:46937593..46939848,2	K562	blood:
2	chr11:46933810..46936759-chr11:46937673..46939969,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10742785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838631	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4752934	1.00[EUR][1000 genomes]
rs4752935	1.00[EUR][1000 genomes]
rs4752937	1.00[EUR][1000 genomes]
rs6485688	1.00[EUR][1000 genomes]
rs6485709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930991	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs898603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9794941	1.00[EUR][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46921600-46936000	Weak transcription	Pancreas	Pancrea
2	chr11:46921600-46936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46921800-46938400	Weak transcription	Gastric	stomach
4	chr11:46928600-46937200	Weak transcription	HepG2	liver
5	chr11:46929400-46934600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:46932800-46937000	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:46933600-46934600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:46933600-46935600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:46933600-46935600	Enhancers	Fetal Heart	heart
10	chr11:46933600-46939000	Enhancers	Spleen	Spleen
11	chr11:46933800-46934800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr11:46933800-46934800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr11:46933800-46935200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:46933800-46935200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:46933800-46935400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr11:46933800-46935800	Enhancers	Fetal Kidney	kidney
17	chr11:46933800-46936200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr11:46933800-46937000	Enhancers	Brain Substantia Nigra	brain
19	chr11:46933800-46937000	Enhancers	Fetal Lung	lung
20	chr11:46933800-46937000	Enhancers	HSMMtube	muscle
21	chr11:46934000-46934600	Active TSS	Colonic Mucosa	Colon
22	chr11:46934000-46934600	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr11:46934000-46934600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr11:46934000-46934600	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr11:46934000-46934600	Active TSS	Rectal Smooth Muscle	rectum
26	chr11:46934000-46934600	Flanking Active TSS	NH-A	brain
27	chr11:46934000-46934800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:46934000-46934800	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr11:46934000-46934800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:46934000-46934800	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr11:46934000-46934800	Enhancers	Right Atrium	heart
32	chr11:46934000-46934800	Flanking Active TSS	Dnd41	blood
33	chr11:46934000-46934800	Flanking Active TSS	NHEK	skin
34	chr11:46934000-46935000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
35	chr11:46934000-46935000	Active TSS	H9 Cell Line	embryonic stem cell
36	chr11:46934000-46935000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:46934000-46935000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:46934000-46935200	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr11:46934000-46935200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:46934000-46935200	Flanking Active TSS	Brain Germinal Matrix	brain
41	chr11:46934000-46935200	Bivalent Enhancer	Fetal Muscle Leg	muscle
42	chr11:46934000-46935400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:46934000-46935400	Enhancers	Right Ventricle	heart
44	chr11:46934000-46935800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr11:46934000-46936200	Bivalent Enhancer	Fetal Thymus	thymus
46	chr11:46934000-46936400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:46934000-46936600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:46934000-46936800	Enhancers	Duodenum Mucosa	Duodenum
49	chr11:46934000-46936800	Enhancers	HSMM	muscle
50	chr11:46934000-46936800	Enhancers	NHLF	lung

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