Variant report

Variant	rs6487895
Chromosome Location	chr12:30425629-30425630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10843690	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11050794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050808	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11050823	0.81[EUR][1000 genomes]
rs11050826	0.80[EUR][1000 genomes]
rs11050828	0.81[EUR][1000 genomes]
rs11513492	0.81[EUR][1000 genomes]
rs11608277	0.81[EUR][1000 genomes]
rs11612317	0.81[EUR][1000 genomes]
rs11613370	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11613642	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12424369	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815231	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12823889	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12826074	0.83[EUR][1000 genomes]
rs1429628	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1896909	0.80[EUR][1000 genomes]
rs2010880	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2099145	0.85[AMR][1000 genomes]
rs34300913	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35004835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs354136	0.81[EUR][1000 genomes]
rs61920761	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6487894	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6487896	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725063	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7295282	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296820	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7298770	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303893	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7304070	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7313186	0.83[AMR][1000 genomes]
rs7314209	0.86[AMR][1000 genomes]
rs7955178	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7956322	0.86[AMR][1000 genomes]
rs7964943	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7978437	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs891318	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv821695	chr12:30287314-30450174	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1042966	chr12:30420183-30439329	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30424800-30430000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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