Variant report

Variant	rs10843690
Chromosome Location	chr12:30421778-30421779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11050794	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11050808	0.88[EUR][1000 genomes]
rs11050823	0.83[EUR][1000 genomes]
rs11050826	0.82[EUR][1000 genomes]
rs11050828	0.83[EUR][1000 genomes]
rs11513492	0.83[EUR][1000 genomes]
rs11608277	0.83[EUR][1000 genomes]
rs11612317	0.83[EUR][1000 genomes]
rs11613370	0.83[EUR][1000 genomes]
rs11613642	0.86[EUR][1000 genomes]
rs11614392	0.80[EUR][1000 genomes]
rs12424369	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12425538	0.84[CEU][hapmap]
rs12815231	0.86[EUR][1000 genomes]
rs12823889	0.85[EUR][1000 genomes]
rs12826074	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12831890	0.92[CEU][hapmap]
rs1429627	0.84[ASN][1000 genomes]
rs1429628	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1652182	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16906003	0.84[ASN][1000 genomes]
rs16906024	0.84[ASN][1000 genomes]
rs1731489	0.82[EUR][1000 genomes]
rs1896909	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2010880	0.86[EUR][1000 genomes]
rs2099145	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34300913	0.86[EUR][1000 genomes]
rs35004835	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs354136	0.83[EUR][1000 genomes]
rs61920761	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487894	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6487895	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6487896	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6487897	0.91[CEU][hapmap]
rs725063	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7295282	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7296820	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298770	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7303893	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7304070	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs7313186	0.94[EUR][1000 genomes]
rs7314209	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7955178	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956322	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7964943	0.83[EUR][1000 genomes]
rs7978437	0.83[EUR][1000 genomes]
rs891318	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv821695	chr12:30287314-30450174	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv430465	chr12:30377630-30422833	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1042966	chr12:30420183-30439329	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30420800-30421800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:30420800-30421800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr12:30421200-30422000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:30421200-30422800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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