Variant report

Variant	rs6487897
Chromosome Location	chr12:30451922-30451923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10843690	0.88[EUR][1000 genomes]
rs11050794	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11050808	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050823	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11050826	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11050828	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11513492	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11608277	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11612317	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11613370	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11613642	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11614392	0.92[EUR][1000 genomes]
rs12424369	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12425538	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12815231	0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12823889	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12826074	0.97[EUR][1000 genomes]
rs12831890	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1429628	0.88[EUR][1000 genomes]
rs1652182	0.93[EUR][1000 genomes]
rs1731489	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1896909	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs2010880	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34300913	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35004835	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs354136	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61920761	0.88[EUR][1000 genomes]
rs6487894	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6487895	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6487896	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs725063	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7295282	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7296820	0.88[EUR][1000 genomes]
rs7298770	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7303893	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7304070	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7313186	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7314209	0.92[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7955178	0.88[EUR][1000 genomes]
rs7964943	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7978437	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs891318	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links