Variant report

Variant	rs7296820
Chromosome Location	chr12:30431621-30431622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10843690	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050794	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11050808	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11050823	0.83[EUR][1000 genomes]
rs11050826	0.82[EUR][1000 genomes]
rs11050828	0.83[EUR][1000 genomes]
rs11513492	0.83[EUR][1000 genomes]
rs11608277	0.83[EUR][1000 genomes]
rs11612317	0.83[EUR][1000 genomes]
rs11613370	0.83[EUR][1000 genomes]
rs11613642	0.86[EUR][1000 genomes]
rs11614392	0.80[EUR][1000 genomes]
rs12424369	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12815231	0.86[EUR][1000 genomes]
rs12823889	0.85[EUR][1000 genomes]
rs12826074	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1429627	0.84[ASN][1000 genomes]
rs1429628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1652182	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16906003	0.84[ASN][1000 genomes]
rs16906024	0.84[ASN][1000 genomes]
rs1731489	0.82[EUR][1000 genomes]
rs1896909	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2010880	0.86[EUR][1000 genomes]
rs2099145	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34300913	0.86[EUR][1000 genomes]
rs35004835	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs354136	0.83[EUR][1000 genomes]
rs61920761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487894	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6487895	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6487896	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs725063	0.86[EUR][1000 genomes]
rs7295282	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298770	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7303893	0.86[EUR][1000 genomes]
rs7304070	0.85[EUR][1000 genomes]
rs7313186	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7314209	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7955178	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956322	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7964943	0.83[EUR][1000 genomes]
rs7978437	0.83[EUR][1000 genomes]
rs891318	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv821695	chr12:30287314-30450174	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1042966	chr12:30420183-30439329	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30430600-30432000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr12:30431400-30433400	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links