Variant report

Variant	rs6492589
Chromosome Location	chr13:92822102-92822103
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12430272	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2150471	0.86[CHD][hapmap];0.95[JPT][hapmap]
rs2183606	0.95[JPT][hapmap]
rs2183607	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs4238301	0.84[ASN][1000 genomes]
rs4773668	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs4773670	0.87[CHB][hapmap];0.84[CHD][hapmap];0.83[ASN][1000 genomes]
rs4773672	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs6492586	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6492587	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs66792168	0.94[ASN][1000 genomes]
rs7320937	0.85[JPT][hapmap]
rs7989907	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7992380	0.90[JPT][hapmap]
rs7993836	0.82[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs9516019	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9583996	0.92[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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