Variant report

Variant	rs9516019
Chromosome Location	chr13:92812875-92812876
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12430272	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs2150471	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs2183606	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs2183607	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4773668	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs4773670	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs4773672	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs6492586	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6492587	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6492589	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs66792168	0.80[ASN][1000 genomes]
rs7320937	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7989907	0.91[JPT][hapmap]
rs7992380	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7993836	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9523519	0.91[CHB][hapmap]
rs9583996	0.91[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv974035	chr13:92804487-92821780	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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