Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10744958	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11071229	0.82[EUR][1000 genomes]
rs1134352	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11635063	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12593446	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12594053	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12906680	0.86[EUR][1000 genomes]
rs12912488	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12912732	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1605837	0.88[ASN][1000 genomes]
rs16976653	0.83[ASN][1000 genomes]
rs17819276	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17819294	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1912404	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28444575	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34552316	0.83[ASN][1000 genomes]
rs3759865	0.86[EUR][1000 genomes]
rs4774229	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493827	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6493828	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7163864	0.88[ASN][1000 genomes]
rs7180060	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7182280	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs967128	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56166000-56185400	Weak transcription	Hela-S3	cervix
2	chr15:56172000-56186200	Weak transcription	Osteobl	bone
3	chr15:56172800-56189600	Weak transcription	Placenta	Placenta
4	chr15:56174600-56181000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:56175000-56181000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:56175200-56186000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:56175400-56186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:56175600-56186200	Weak transcription	NHEK	skin
9	chr15:56175800-56184800	Weak transcription	HSMM	muscle
10	chr15:56175800-56189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:56176000-56181200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
13	chr15:56176800-56186800	Weak transcription	NH-A	brain
14	chr15:56177400-56185000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:56178000-56181000	Weak transcription	A549	lung
16	chr15:56179800-56181000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:56180400-56182800	Weak transcription	Psoas Muscle	Psoas

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