Variant report

Variant	rs7182280
Chromosome Location	chr15:56188144-56188145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56034445..56037110-chr15:56186811..56188699,2	MCF-7	breast:
2	chr15:56186114..56188918-chr15:56190868..56192433,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166450	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10744958	0.87[ASN][1000 genomes]
rs1134352	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11635063	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12593446	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12594053	0.86[ASN][1000 genomes]
rs12912488	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12912732	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1605837	0.89[ASN][1000 genomes]
rs16976653	1.00[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs17819276	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17819294	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1912404	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.84[TSI][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28444575	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34552316	0.84[ASN][1000 genomes]
rs4774229	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493825	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493827	0.89[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs6493828	0.84[ASN][1000 genomes]
rs7163864	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7180060	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8042640	0.81[ASN][1000 genomes]
rs967128	0.85[ASN][1000 genomes]
rs9920283	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56172800-56189600	Weak transcription	Placenta	Placenta
2	chr15:56175800-56189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
4	chr15:56181800-56188800	Weak transcription	HMEC	breast
5	chr15:56185000-56189600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:56185400-56189600	Enhancers	Hela-S3	cervix
7	chr15:56186200-56188200	Active TSS	Psoas Muscle	Psoas
8	chr15:56186200-56188400	Enhancers	Primary T cells from cord blood	blood
9	chr15:56186200-56188400	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr15:56186400-56189800	Weak transcription	Small Intestine	intestine
11	chr15:56186600-56188400	Enhancers	Dnd41	blood
12	chr15:56186600-56188800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:56186800-56189400	Weak transcription	HSMM	muscle
14	chr15:56186800-56189600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:56186800-56189600	Weak transcription	HSMMtube	muscle
16	chr15:56186800-56189800	Weak transcription	Stomach Mucosa	stomach
17	chr15:56187000-56189400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:56187000-56189600	Weak transcription	NH-A	brain
19	chr15:56187000-56189600	Weak transcription	NHDF-Ad	bronchial
20	chr15:56187000-56189600	Enhancers	NHEK	skin
21	chr15:56187400-56188200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr15:56187600-56188200	Flanking Active TSS	A549	lung
23	chr15:56187600-56189600	Enhancers	HUVEC	blood vessel
24	chr15:56187800-56188400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr15:56187800-56188600	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr15:56187800-56188800	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:56187800-56189000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:56187800-56189400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:56187800-56189600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:56187800-56189800	Weak transcription	Right Atrium	heart
31	chr15:56188000-56188200	Enhancers	Osteobl	bone
32	chr15:56188000-56188600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:56188000-56188800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:56188000-56189400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:56188000-56189400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:56188000-56189400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:56188000-56189400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:56188000-56189400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:56188000-56189600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr15:56188000-56189600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:56188000-56189800	Weak transcription	Left Ventricle	heart

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