Variant report

Variant	rs6495199
Chromosome Location	chr15:76575709-76575710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76573739..76576523-chr15:76603684..76605605,3	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16967886	1.00[AMR][1000 genomes]
rs55831300	0.88[AFR][1000 genomes]
rs56220133	0.92[AFR][1000 genomes]
rs62028361	0.84[AFR][1000 genomes]
rs62030186	0.96[AFR][1000 genomes]
rs62030234	0.92[AFR][1000 genomes]
rs7175022	0.92[AFR][1000 genomes]
rs7177769	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72736862	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76550600-76578400	Strong transcription	Liver	Liver
2	chr15:76555800-76578800	Weak transcription	Psoas Muscle	Psoas
3	chr15:76555800-76579000	Weak transcription	NHLF	lung
4	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
5	chr15:76556400-76581400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
7	chr15:76557000-76582800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
9	chr15:76560000-76582400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:76560200-76578600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:76561000-76576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:76561000-76580400	Strong transcription	Adipose Nuclei	Adipose
13	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:76561200-76578400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:76561400-76578800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
17	chr15:76562600-76586000	Weak transcription	Brain Angular Gyrus	brain
18	chr15:76562800-76580600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:76563000-76577000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:76563000-76578200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:76563000-76578400	Strong transcription	Primary B cells from peripheral blood	blood
22	chr15:76563000-76579200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:76563000-76581800	Weak transcription	Fetal Brain Male	brain
24	chr15:76563000-76586400	Weak transcription	Fetal Heart	heart
25	chr15:76563200-76590800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:76564200-76580600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:76565200-76581200	Strong transcription	HepG2	liver
28	chr15:76565200-76581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:76566400-76579600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:76567600-76578200	Weak transcription	Brain Germinal Matrix	brain
31	chr15:76567600-76581800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:76568400-76578200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:76568800-76575800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:76568800-76576400	Strong transcription	Fetal Thymus	thymus
35	chr15:76568800-76581600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:76569000-76580600	Strong transcription	Osteobl	bone
37	chr15:76569000-76585200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:76569000-76586400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:76569200-76576200	Strong transcription	HSMM	muscle
40	chr15:76569200-76576600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr15:76569200-76577200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:76569200-76580400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:76569200-76581400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr15:76569200-76581600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr15:76569400-76577200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr15:76569400-76577800	Strong transcription	Left Ventricle	heart
47	chr15:76569400-76579800	Strong transcription	Fetal Lung	lung
48	chr15:76569400-76580400	Strong transcription	Fetal Muscle Leg	muscle
49	chr15:76569400-76583600	Strong transcription	Hela-S3	cervix
50	chr15:76569400-76585000	Strong transcription	Fetal Intestine Large	intestine

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