Variant report

Variant	rs7177769
Chromosome Location	chr15:76571111-76571112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76570590..76572904-chr15:76586063..76587618,2	K562	blood:
2	chr15:76570551..76572418-chr15:76599508..76601781,2	K562	blood:
3	chr15:76570469..76574475-chr15:76576214..76579233,4	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16967886	1.00[AMR][1000 genomes]
rs55831300	0.81[AFR][1000 genomes]
rs56220133	0.85[AFR][1000 genomes]
rs56233972	0.86[AFR][1000 genomes]
rs62030186	0.88[AFR][1000 genomes]
rs62030234	0.85[AFR][1000 genomes]
rs6495199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175022	0.85[AFR][1000 genomes]
rs72736862	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76550600-76578400	Strong transcription	Liver	Liver
2	chr15:76555800-76574200	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr15:76555800-76578800	Weak transcription	Psoas Muscle	Psoas
4	chr15:76555800-76579000	Weak transcription	NHLF	lung
5	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
6	chr15:76556400-76581400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
8	chr15:76557000-76582800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:76557600-76573400	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
11	chr15:76560000-76582400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:76560200-76578600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:76561000-76574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:76561000-76574800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:76561000-76576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:76561000-76580400	Strong transcription	Adipose Nuclei	Adipose
17	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:76561200-76578400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:76561400-76578800	Strong transcription	Duodenum Mucosa	Duodenum
20	chr15:76561600-76574200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:76562000-76573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
23	chr15:76562600-76574600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr15:76562600-76586000	Weak transcription	Brain Angular Gyrus	brain
25	chr15:76562800-76571600	Weak transcription	Colonic Mucosa	Colon
26	chr15:76562800-76574400	Weak transcription	Brain Substantia Nigra	brain
27	chr15:76562800-76580600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:76563000-76574400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:76563000-76577000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr15:76563000-76578200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:76563000-76578400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr15:76563000-76579200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:76563000-76581800	Weak transcription	Fetal Brain Male	brain
34	chr15:76563000-76586400	Weak transcription	Fetal Heart	heart
35	chr15:76563200-76571800	Weak transcription	HSMMtube	muscle
36	chr15:76563200-76574000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:76563200-76590800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr15:76563400-76572400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:76563400-76574200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:76563800-76574200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:76564200-76572600	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:76564200-76574400	Weak transcription	NHEK	skin
43	chr15:76564200-76580600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:76564400-76574200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:76564600-76573400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr15:76565200-76571600	Weak transcription	Pancreas	Pancrea
47	chr15:76565200-76571800	Weak transcription	Right Ventricle	heart
48	chr15:76565200-76572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:76565200-76581200	Strong transcription	HepG2	liver
50	chr15:76565200-76581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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