Variant report

Variant	rs6495732
Chromosome Location	chr15:35299783-35299784
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SRF	chr15:35299569-35299943	H1-hESC	embryonic stem cell:	n/a	n/a
2	SRF	chr15:35299693-35299848	GM12878	blood:	n/a	n/a
3	SRF	chr15:35299594-35299874	H1-hESC	embryonic stem cell:	n/a	n/a
4	NFYA	chr15:35299606-35299879	K562	blood:	n/a	n/a
5	IRF1	chr15:35299731-35299798	K562	blood:	n/a	n/a
6	SRF	chr15:35299669-35299910	HepG2	liver:	n/a	n/a
7	SRF	chr15:35299584-35299943	ECC-1	luminal epithelium:	n/a	n/a
8	NFYB	chr15:35299701-35299915	K562	blood:	n/a	n/a
9	SRF	chr15:35299565-35299916	K562	blood:	n/a	n/a
10	SRF	chr15:35299506-35300096	ECC-1	luminal epithelium:	n/a	n/a
11	SRF	chr15:35299669-35299888	GM12878	blood:	n/a	n/a
12	SRF	chr15:35299635-35299859	HepG2	liver:	n/a	n/a
13	SRF	chr15:35299490-35299987	MCF-7	breast:	n/a	n/a
14	SRF	chr15:35299641-35299880	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35296271..35299803-chr15:35301130..35304541,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259587	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11852811	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854422	1.00[JPT][hapmap]
rs11855433	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855456	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954283	1.00[JPT][hapmap]
rs16960205	1.00[JPT][hapmap]
rs16960207	1.00[JPT][hapmap]
rs16960208	1.00[JPT][hapmap]
rs16960222	1.00[JPT][hapmap]
rs17237242	1.00[JPT][hapmap]
rs17237249	1.00[JPT][hapmap]
rs17415658	1.00[JPT][hapmap]
rs17818176	1.00[JPT][hapmap]
rs17818182	1.00[JPT][hapmap]
rs34987836	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56181212	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164148	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171890	1.00[JPT][hapmap]
rs7174356	1.00[JPT][hapmap]
rs72700702	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702704	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702713	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702720	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702721	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702727	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702733	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702734	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702738	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702740	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026240	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027569	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35299200-35300000	Enhancers	K562	blood
2	chr15:35299400-35311400	Weak transcription	H9 Cell Line	embryonic stem cell

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