Variant report

Variant	rs16960207
Chromosome Location	chr15:35259686-35259687
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:35259669-35260050	HL-60	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:35256436..35258004-chr15:35259347..35262190,2	MCF-7	breast:
2	chr15:35252626..35258121-chr15:35259367..35263228,9	K562	blood:
3	chr15:35255428..35258097-chr15:35259367..35262801,3	K562	blood:
4	chr15:35258173..35260115-chr15:35260348..35263178,2	K562	blood:
5	chr15:34330030..34332710-chr15:35259474..35262090,2	MCF-7	breast:

No data

Variant related genes	Relation type
AQR	TF binding region
ENSG00000169857	Chromatin interaction
ENSG00000021776	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10163053	0.90[EUR][1000 genomes]
rs10163067	0.90[EUR][1000 genomes]
rs11854422	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12324241	1.00[ASN][1000 genomes]
rs16954283	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16960205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960222	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973797	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs17237242	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17237249	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415658	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17818176	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17818182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2293125	1.00[ASN][1000 genomes]
rs28392765	0.90[EUR][1000 genomes]
rs28393184	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444764	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60358948	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495719	1.00[ASN][1000 genomes]
rs6495732	1.00[JPT][hapmap]
rs7171890	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7174356	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7180251	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs74008016	0.90[EUR][1000 genomes]
rs74008018	0.90[EUR][1000 genomes]
rs9972346	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
2	chr15:35220600-35260200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:35221200-35260800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:35223400-35260600	Weak transcription	Fetal Heart	heart
5	chr15:35229400-35261000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:35232200-35260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:35235000-35260200	Weak transcription	Stomach Mucosa	stomach
8	chr15:35235000-35260800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:35235200-35260800	Weak transcription	Fetal Brain Female	brain
10	chr15:35236600-35260800	Weak transcription	Fetal Kidney	kidney
11	chr15:35240000-35261000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:35240600-35260600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:35240600-35260800	Weak transcription	Brain Anterior Caudate	brain
14	chr15:35243200-35261200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:35244600-35260800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:35244800-35260400	Weak transcription	HMEC	breast
17	chr15:35244800-35260800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:35244800-35260800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:35245000-35260800	Weak transcription	NHDF-Ad	bronchial
20	chr15:35248400-35260600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr15:35248400-35260800	Weak transcription	Osteobl	bone
22	chr15:35248800-35259800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:35248800-35260200	Weak transcription	Pancreas	Pancrea
24	chr15:35250200-35259800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr15:35251400-35259800	Strong transcription	Primary B cells from cord blood	blood
26	chr15:35252200-35261000	Weak transcription	Aorta	Aorta
27	chr15:35252400-35260000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:35252400-35260200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:35252400-35260600	Weak transcription	Colonic Mucosa	Colon
30	chr15:35252400-35260600	Weak transcription	NHEK	skin
31	chr15:35252400-35260600	Weak transcription	NHLF	lung
32	chr15:35252600-35259800	Weak transcription	Fetal Brain Male	brain
33	chr15:35254600-35260600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:35254600-35260800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:35254800-35259800	Weak transcription	Fetal Lung	lung
36	chr15:35254800-35260000	Weak transcription	Lung	lung
37	chr15:35254800-35260200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:35254800-35260800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:35255400-35260000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:35255400-35260200	Weak transcription	Ovary	ovary
41	chr15:35255600-35260200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:35255600-35260200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr15:35255600-35260200	Weak transcription	Thymus	Thymus
44	chr15:35255600-35260800	Weak transcription	Right Ventricle	heart
45	chr15:35255600-35260800	Weak transcription	NH-A	brain
46	chr15:35256000-35260200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:35256200-35260800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:35256600-35260200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:35256600-35260600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:35256800-35260000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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