Variant report

Variant	rs74008018
Chromosome Location	chr15:35280399-35280400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:35278794..35283582-chr15:35283942..35288956,6	MCF-7	breast:
2	chr15:35279610..35280504-chr2:157292526..157293432,2	Hela-S3	cervix:
3	chr15:35279771..35280552-chr19:55895515..55896297,2	Hela-S3	cervix:
4	chr15:35261588..35262237-chr15:35280214..35280953,2	NB4	blood:
5	chr15:35259687..35263562-chr15:35278927..35282925,7	K562	blood:
6	chr15:35261639..35264057-chr15:35280199..35283795,4	MCF-7	breast:
7	chr15:35280036..35281069-chr7:91763295..91764396,3	Hela-S3	cervix:
8	chr15:35280331..35280889-chr7:2671586..2672540,2	Hela-S3	cervix:
9	chr15:35280004..35280547-chr2:219265495..219266120,2	Hela-S3	cervix:
10	chr15:35270344..35273433-chr15:35279404..35282437,5	MCF-7	breast:
11	chr15:35266160..35271969-chr15:35278502..35282901,8	K562	blood:
12	chr15:35260342..35263784-chr15:35278927..35282487,7	K562	blood:
13	chr15:35279962..35280696-chr6:41040665..41041234,2	Hela-S3	cervix:
14	chr11:75273471..75274087-chr15:35279997..35280692,2	Hela-S3	cervix:
15	chr15:35261372..35262043-chr15:35279881..35280440,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000149257	Chromatin interaction
ENSG00000259181	Chromatin interaction
ENSG00000233493	Chromatin interaction
ENSG00000001630	Chromatin interaction
ENSG00000136295	Chromatin interaction
ENSG00000115159	Chromatin interaction
ENSG00000188693	Chromatin interaction
ENSG00000212768	Chromatin interaction
ENSG00000144579	Chromatin interaction
ENSG00000021776	Chromatin interaction
ENSG00000001167	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10163053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10163067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960205	0.90[EUR][1000 genomes]
rs16960207	0.90[EUR][1000 genomes]
rs16960208	0.90[EUR][1000 genomes]
rs16973797	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28392765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393184	0.93[EUR][1000 genomes]
rs28444764	0.93[EUR][1000 genomes]
rs60358948	0.93[EUR][1000 genomes]
rs7180251	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74008016	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35278400-35281200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr15:35278400-35281600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:35278600-35281200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:35278600-35281200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:35279000-35281000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr15:35279000-35281000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr15:35279000-35281000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:35279000-35281200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr15:35279000-35281200	Active TSS	Fetal Intestine Large	intestine
10	chr15:35279000-35281400	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr15:35279000-35281400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:35279200-35281000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:35279200-35281000	Active TSS	Esophagus	oesophagus
14	chr15:35279200-35281000	Active TSS	Lung	lung
15	chr15:35279200-35281000	Active TSS	Pancreas	Pancrea
16	chr15:35279200-35281000	Active TSS	HMEC	breast
17	chr15:35279200-35281200	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr15:35279200-35281200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:35279200-35281200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:35279200-35281200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:35279200-35281200	Active TSS	Fetal Intestine Small	intestine
22	chr15:35279200-35281200	Active TSS	Fetal Muscle Trunk	muscle
23	chr15:35279200-35281200	Active TSS	Left Ventricle	heart
24	chr15:35279200-35281200	Active TSS	Ovary	ovary
25	chr15:35279200-35281200	Active TSS	Psoas Muscle	Psoas
26	chr15:35279200-35281200	Active TSS	GM12878-XiMat	blood
27	chr15:35279200-35281200	Active TSS	HSMM	muscle
28	chr15:35279200-35281200	Active TSS	HSMMtube	muscle
29	chr15:35279200-35281200	Active TSS	NHDF-Ad	bronchial
30	chr15:35279200-35281400	Active TSS	Right Atrium	heart
31	chr15:35279200-35281400	Active TSS	Right Ventricle	heart
32	chr15:35279400-35281000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:35279400-35281000	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr15:35279400-35281000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:35279400-35281000	Bivalent/Poised TSS	HepG2	liver
36	chr15:35279400-35281200	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr15:35279400-35281200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:35279400-35281200	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr15:35279400-35281200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:35279400-35281200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:35279400-35281200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:35279400-35281200	Active TSS	A549	lung
43	chr15:35279400-35281200	Active TSS	NHEK	skin
44	chr15:35279400-35281200	Active TSS	NHLF	lung
45	chr15:35279400-35282000	Active TSS	Aorta	Aorta
46	chr15:35279600-35280600	Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr15:35279600-35280600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr15:35279600-35280800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:35279600-35280800	Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr15:35279600-35280800	Active TSS	Dnd41	blood

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