Variant report

Variant	rs74008016
Chromosome Location	chr15:35275661-35275662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:35269375..35271002-chr15:35273264..35275712,2	MCF-7	breast:
2	chr15:35271322..35272882-chr15:35274387..35275895,2	MCF-7	breast:
3	chr15:35263427..35267661-chr15:35274185..35276277,3	MCF-7	breast:
4	chr15:35267358..35269882-chr15:35273203..35276166,3	K562	blood:
5	chr15:35273274..35276685-chr15:35278629..35280657,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198146	Chromatin interaction
ENSG00000212768	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10163053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10163067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960205	0.90[EUR][1000 genomes]
rs16960207	0.90[EUR][1000 genomes]
rs16960208	0.90[EUR][1000 genomes]
rs16973797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28392765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393184	0.93[EUR][1000 genomes]
rs28444764	0.93[EUR][1000 genomes]
rs60358948	0.93[EUR][1000 genomes]
rs7180251	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74008018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35262000-35276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:35262000-35278600	Weak transcription	Gastric	stomach
3	chr15:35262400-35278600	Weak transcription	HSMMtube	muscle
4	chr15:35262400-35279000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:35262400-35279000	Weak transcription	Aorta	Aorta
6	chr15:35262600-35276200	Weak transcription	Primary B cells from cord blood	blood
7	chr15:35262600-35276200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:35262600-35276200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:35262600-35276400	Weak transcription	HepG2	liver
10	chr15:35262600-35276600	Weak transcription	Lung	lung
11	chr15:35262600-35277000	Weak transcription	Fetal Intestine Small	intestine
12	chr15:35262600-35277200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:35262600-35277200	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:35262600-35278200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:35262600-35278600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:35262600-35278600	Weak transcription	Right Ventricle	heart
17	chr15:35262600-35278600	Weak transcription	Thymus	Thymus
18	chr15:35262600-35278800	Weak transcription	Esophagus	oesophagus
19	chr15:35262600-35278800	Weak transcription	Ovary	ovary
20	chr15:35262800-35277200	Weak transcription	Pancreas	Pancrea
21	chr15:35262800-35277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:35266200-35276800	Weak transcription	Fetal Heart	heart
23	chr15:35267200-35277800	Weak transcription	Spleen	Spleen
24	chr15:35267600-35278600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:35268600-35278400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:35269600-35278600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:35270000-35278400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:35270200-35276400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:35271000-35277600	Strong transcription	HSMM	muscle
30	chr15:35271800-35278600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:35272600-35277400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:35273000-35276400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:35273200-35275800	Strong transcription	Primary hematopoietic stem cells	blood
34	chr15:35273200-35276200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr15:35273200-35276200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:35273200-35277200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:35273200-35277200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:35273200-35277400	Strong transcription	A549	lung
39	chr15:35273400-35276000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:35273400-35276200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:35273400-35276200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:35273400-35276200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:35273400-35276200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr15:35273400-35276800	Strong transcription	GM12878-XiMat	blood
45	chr15:35273400-35277000	Strong transcription	Primary T cells from cord blood	blood
46	chr15:35273400-35277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:35273400-35277400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:35273400-35277800	Strong transcription	Primary B cells from peripheral blood	blood
49	chr15:35273400-35277800	Strong transcription	K562	blood
50	chr15:35273400-35278400	Enhancers	Cortex derived primary cultured neurospheres	brain

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