Variant report

Variant	rs16973797
Chromosome Location	chr15:35273432-35273433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:35269375..35271002-chr15:35273264..35275712,2	MCF-7	breast:
2	chr15:35270344..35273433-chr15:35279404..35282437,5	MCF-7	breast:
3	chr15:35272114..35275594-chr15:35276542..35279290,3	MCF-7	breast:
4	chr15:35267358..35269882-chr15:35273203..35276166,3	K562	blood:
5	chr15:35273274..35276685-chr15:35278629..35280657,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212768	Chromatin interaction
ENSG00000198146	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10163053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10163067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854422	1.00[CHB][hapmap]
rs16954283	1.00[CHB][hapmap]
rs16960205	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs16960207	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs16960208	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs16960222	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs17237242	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17237249	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17415658	1.00[CHB][hapmap]
rs17818176	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17818182	1.00[CHB][hapmap]
rs28392765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393184	0.93[EUR][1000 genomes]
rs28444764	0.93[EUR][1000 genomes]
rs60358948	0.93[EUR][1000 genomes]
rs7165312	0.83[YRI][hapmap]
rs7171890	1.00[CHB][hapmap]
rs7174356	1.00[CHB][hapmap]
rs7180251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74008016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74008018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv827295	chr15:35271409-35275645	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35262000-35276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:35262000-35278600	Weak transcription	Gastric	stomach
3	chr15:35262400-35273600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:35262400-35273600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:35262400-35273600	Weak transcription	Fetal Intestine Large	intestine
6	chr15:35262400-35273600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:35262400-35274600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:35262400-35274600	Weak transcription	NHLF	lung
9	chr15:35262400-35278600	Weak transcription	HSMMtube	muscle
10	chr15:35262400-35279000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:35262400-35279000	Weak transcription	Aorta	Aorta
12	chr15:35262600-35273600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:35262600-35273600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:35262600-35273600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:35262600-35273600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:35262600-35273600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:35262600-35273600	Weak transcription	Liver	Liver
18	chr15:35262600-35273600	Weak transcription	Brain Germinal Matrix	brain
19	chr15:35262600-35273600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:35262600-35273600	Weak transcription	Hela-S3	cervix
21	chr15:35262600-35273600	Weak transcription	HMEC	breast
22	chr15:35262600-35273600	Weak transcription	NHEK	skin
23	chr15:35262600-35273800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:35262600-35273800	Weak transcription	Fetal Lung	lung
25	chr15:35262600-35273800	Weak transcription	NHDF-Ad	bronchial
26	chr15:35262600-35274200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:35262600-35274400	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:35262600-35274400	Weak transcription	NH-A	brain
29	chr15:35262600-35274600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:35262600-35274600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:35262600-35274600	Weak transcription	Left Ventricle	heart
32	chr15:35262600-35274800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:35262600-35274800	Weak transcription	Fetal Kidney	kidney
34	chr15:35262600-35274800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:35262600-35274800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr15:35262600-35275000	Weak transcription	Osteobl	bone
37	chr15:35262600-35276200	Weak transcription	Primary B cells from cord blood	blood
38	chr15:35262600-35276200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:35262600-35276200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr15:35262600-35276400	Weak transcription	HepG2	liver
41	chr15:35262600-35276600	Weak transcription	Lung	lung
42	chr15:35262600-35277000	Weak transcription	Fetal Intestine Small	intestine
43	chr15:35262600-35277200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr15:35262600-35277200	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:35262600-35278200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr15:35262600-35278600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:35262600-35278600	Weak transcription	Right Ventricle	heart
48	chr15:35262600-35278600	Weak transcription	Thymus	Thymus
49	chr15:35262600-35278800	Weak transcription	Esophagus	oesophagus
50	chr15:35262600-35278800	Weak transcription	Ovary	ovary

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