Variant report

Variant	rs7171890
Chromosome Location	chr15:35211681-35211682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35211074..35213644-chr15:35214975..35217514,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11854422	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324241	1.00[ASN][1000 genomes]
rs16954283	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960136	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16960205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16960207	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16960208	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16960222	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973797	1.00[CHB][hapmap]
rs17237242	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17237249	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17415658	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17818176	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17818182	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2293125	1.00[ASN][1000 genomes]
rs28393184	1.00[ASN][1000 genomes]
rs28444764	1.00[ASN][1000 genomes]
rs60358948	1.00[ASN][1000 genomes]
rs6495718	0.82[GIH][hapmap]
rs6495719	0.87[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495732	1.00[JPT][hapmap]
rs7174356	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180251	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7171890	ZNF770	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35186000-35212400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:35186000-35212600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:35186000-35213000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:35186000-35220000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:35186000-35220000	Weak transcription	Pancreas	Pancrea
7	chr15:35186000-35223200	Weak transcription	Gastric	stomach
8	chr15:35186000-35232000	Weak transcription	Fetal Brain Male	brain
9	chr15:35186200-35212000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:35186200-35212400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:35186200-35212400	Strong transcription	Liver	Liver
12	chr15:35186400-35238800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:35186600-35212200	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr15:35186600-35212200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:35186600-35212400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:35187200-35212000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:35187400-35212000	Strong transcription	Adipose Nuclei	Adipose
18	chr15:35191400-35212800	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:35192000-35212200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:35192200-35212200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:35192200-35212400	Strong transcription	Placenta	Placenta
22	chr15:35192400-35212000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr15:35192400-35212400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:35192600-35212000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:35192600-35212400	Strong transcription	A549	lung
26	chr15:35197200-35212200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:35197200-35212600	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:35197400-35212000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:35197600-35212200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:35197600-35212200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr15:35197600-35212200	Strong transcription	Dnd41	blood
32	chr15:35197600-35238800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:35198000-35212200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:35198000-35220600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:35198200-35212200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:35198400-35212200	Strong transcription	Primary B cells from cord blood	blood
37	chr15:35198400-35212200	Strong transcription	HUVEC	blood vessel
38	chr15:35198600-35211800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:35198600-35212800	Strong transcription	K562	blood
40	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
41	chr15:35199000-35212200	Weak transcription	Fetal Heart	heart
42	chr15:35199000-35223200	Weak transcription	Spleen	Spleen
43	chr15:35203600-35212200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:35204200-35212200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:35204200-35213000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr15:35204600-35212200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:35204600-35213200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:35204600-35213400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:35204600-35220800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:35204600-35221600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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