Variant report

Variant	rs649979
Chromosome Location	chr6:119435372-119435373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs597392	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs630954	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs653796	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569051	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs661645	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs676491	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs677341	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7759325	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7776256	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs808038	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119431800-119438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:119432400-119440800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:119434600-119435800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:119434600-119438200	Weak transcription	HepG2	liver
5	chr6:119434600-119438200	Weak transcription	K562	blood
6	chr6:119434600-119440200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:119434600-119443400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:119434800-119439800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:119435000-119440400	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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