Variant report

Variant	rs7759325
Chromosome Location	chr6:119441010-119441011
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs597392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs630954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs649979	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs653796	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6569051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs661645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs676491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs677341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7776256	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs808038	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119434600-119443400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:119439200-119448400	Weak transcription	K562	blood
3	chr6:119440400-119444000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:119440400-119445400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:119440600-119445400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:119440600-119448400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:119440800-119441800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:119440800-119441800	Enhancers	Osteobl	bone
9	chr6:119440800-119442000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:119440800-119445600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:119441000-119441200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:119441000-119441200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:119441000-119441200	Enhancers	NHLF	lung
14	chr6:119441000-119441400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:119441000-119441400	Enhancers	NH-A	brain
16	chr6:119441000-119441400	Enhancers	NHDF-Ad	bronchial
17	chr6:119441000-119441600	Enhancers	Adipose Nuclei	Adipose
18	chr6:119441000-119441800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:119441000-119441800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:119441000-119441800	Enhancers	HSMM	muscle
21	chr6:119441000-119442200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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