Variant report

Variant	rs808038
Chromosome Location	chr6:119448317-119448318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs597392	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs630954	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs649979	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs653796	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6569051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs661645	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs676491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs677341	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7759325	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7776256	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119439200-119448400	Weak transcription	K562	blood
2	chr6:119440600-119448400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:119441400-119449200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:119441400-119450200	Weak transcription	NH-A	brain
5	chr6:119441800-119450400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:119444800-119449600	Weak transcription	Fetal Lung	lung
7	chr6:119445800-119453400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:119446000-119450200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:119446200-119449400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:119446200-119449800	Weak transcription	HUVEC	blood vessel
11	chr6:119446200-119450200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:119446200-119450600	Weak transcription	NHEK	skin
13	chr6:119446400-119449200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:119447400-119448600	Weak transcription	Stomach Mucosa	stomach
15	chr6:119447600-119448600	Enhancers	HSMMtube	muscle
16	chr6:119447800-119448600	Enhancers	HSMM	muscle
17	chr6:119448200-119448400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:119448200-119448400	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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