Variant report

Variant	rs6509617
Chromosome Location	chr19:52546986-52546987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:54268702..54269329-chr19:52546893..52547395,2	MCF-7	breast:
2	chr15:54268761..54269321-chr19:52546894..52547395,2	MCF-7	breast:
3	chr19:52543896..52546052-chr19:52546665..52549791,3	K562	blood:
4	chr19:52516083..52518649-chr19:52545291..52547420,2	K562	blood:

Variant related genes	Relation type
ENSG00000259669	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11878981	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11879112	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11879591	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11880208	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11881700	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11882132	0.85[ASN][1000 genomes]
rs11882305	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11883134	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16983388	0.85[ASN][1000 genomes]
rs16983412	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16983414	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16983416	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16983430	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16983433	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16983438	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2043296	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2043297	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2116867	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2116868	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28890182	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4545923	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45595131	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56682214	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59651680	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59935130	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60337065	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61018170	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6509614	0.84[ASN][1000 genomes]
rs6509621	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7247339	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7248935	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7249005	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7250212	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7251200	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7253318	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7253973	0.91[EUR][1000 genomes]
rs7255079	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7255485	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7255708	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7258314	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7260171	0.86[ASN][1000 genomes]
rs73052067	0.85[ASN][1000 genomes]
rs73052087	0.84[ASN][1000 genomes]
rs73054175	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73054177	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73054186	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73054189	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73054191	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73066147	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73066172	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73066174	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73066183	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73066191	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7359836	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8100579	0.89[EUR][1000 genomes]
rs8101349	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8108118	0.84[ASN][1000 genomes]
rs8112113	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8112229	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8112306	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8112628	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758767	chr19:51991896-52604625	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	578 gene(s)	inside rSNPs	diseases
2	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
3	esv34938	chr19:52227916-52630935	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv1061029	chr19:52249900-52614747	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2757699	chr19:52259571-52604625	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	esv2751797	chr19:52259588-52604625	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv1061100	chr19:52259839-52617390	Strong transcription Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv1060519	chr19:52270087-52628611	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv579998	chr19:52270942-52613105	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv1056146	chr19:52271018-52617390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
11	nsv1057485	chr19:52271309-52614747	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv870043	chr19:52271348-52619860	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv534202	chr19:52272356-52627403	Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv1059263	chr19:52273257-52607771	ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv1057290	chr19:52273257-52614747	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
16	nsv1064732	chr19:52273257-52617390	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv1059924	chr19:52273257-52628611	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	nsv1057217	chr19:52283498-52617132	Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
19	nsv1062154	chr19:52283498-52617390	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1060988	chr19:52283498-52621644	Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
21	nsv1058292	chr19:52284671-52614747	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
22	nsv1063940	chr19:52284671-52617390	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
23	esv2751798	chr19:52285788-52604625	ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
24	esv2751799	chr19:52285788-52604625	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
25	esv2751800	chr19:52285788-52604625	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
26	esv2751801	chr19:52285788-52604625	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
27	esv34502	chr19:52285829-52604625	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
28	nsv458734	chr19:52287452-52601399	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
29	nsv579999	chr19:52287452-52601399	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
30	nsv458735	chr19:52287452-52607765	Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
31	nsv458736	chr19:52287452-52607765	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
32	nsv580000	chr19:52287452-52607765	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
33	nsv1055523	chr19:52288763-52578312	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
34	nsv544055	chr19:52288763-52578312	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
35	nsv916346	chr19:52288798-52578302	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
36	nsv1059596	chr19:52295063-52553755	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
37	nsv544057	chr19:52295063-52553755	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
38	nsv1064316	chr19:52295063-52593062	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
39	nsv544058	chr19:52295063-52593062	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
40	nsv580002	chr19:52304146-52617298	Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
41	nsv458737	chr19:52306547-52601399	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
42	nsv580003	chr19:52306547-52601399	Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
43	nsv458738	chr19:52306547-52621644	Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
44	nsv580004	chr19:52306547-52621644	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
45	nsv531306	chr19:52327602-52616696	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
46	nsv534124	chr19:52368797-52616696	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
47	nsv833872	chr19:52431787-52619024	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
48	nsv1059138	chr19:52467700-52593062	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
49	esv3366000	chr19:52491073-52842946	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
50	nsv1066015	chr19:52502213-52890308	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6509617	ZNF432	cis	Esophagus Mucosa	GTEx
rs6509617	ZNF841,ZNF432	cis	brain	BrainEAC
rs6509617	ZNF841	cis	Esophagus Mucosa	GTEx

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52533600-52550600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:52536200-52548000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr19:52537000-52550600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
4	chr19:52538600-52551200	Weak transcription	Hela-S3	cervix
5	chr19:52540200-52550200	Strong transcription	Placenta	Placenta
6	chr19:52540200-52550600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr19:52540800-52550400	Strong transcription	Osteobl	bone
8	chr19:52542600-52551200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:52543800-52549000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:52544000-52547800	Weak transcription	K562	blood
11	chr19:52544000-52548800	Strong transcription	HSMM	muscle
12	chr19:52544000-52549400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr19:52544000-52550200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr19:52544000-52550400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:52544800-52548400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr19:52544800-52549400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr19:52544800-52551200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr19:52544800-52551200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr19:52544800-52551200	Weak transcription	Right Ventricle	heart
20	chr19:52545000-52547400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr19:52545000-52547400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr19:52545000-52547400	Weak transcription	NHDF-Ad	bronchial
23	chr19:52545000-52547800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr19:52545000-52548000	Weak transcription	Brain Angular Gyrus	brain
25	chr19:52545000-52548000	Weak transcription	HSMMtube	muscle
26	chr19:52545000-52548200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr19:52545000-52548200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr19:52545000-52548800	Weak transcription	Thymus	Thymus
29	chr19:52545000-52549000	Weak transcription	Gastric	stomach
30	chr19:52545000-52549000	Weak transcription	NHLF	lung
31	chr19:52545000-52549400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:52545000-52549400	Weak transcription	Fetal Thymus	thymus
33	chr19:52545000-52549400	Weak transcription	HepG2	liver
34	chr19:52545000-52549600	Weak transcription	Colonic Mucosa	Colon
35	chr19:52545000-52549600	Weak transcription	HUVEC	blood vessel
36	chr19:52545200-52547400	Weak transcription	Fetal Brain Male	brain
37	chr19:52545200-52547800	Weak transcription	HMEC	breast
38	chr19:52545200-52548400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr19:52545600-52550400	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr19:52545800-52548200	Weak transcription	Fetal Stomach	stomach
41	chr19:52545800-52548800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr19:52546000-52548000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr19:52546000-52550200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr19:52546200-52547400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr19:52546200-52549400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr19:52546400-52547200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr19:52546400-52547200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr19:52546400-52547200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr19:52546400-52547200	Weak transcription	Liver	Liver
50	chr19:52546400-52547200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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