Variant report

Variant	rs6510501
Chromosome Location	chr19:36135793-36135794
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:150)
CpG islands
(count:122)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:150 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr19:36135295-36136304	HepG2	liver:	n/a	n/a
2	CTCF	chr19:36135680-36135830	AG09319	gingival:	n/a	n/a
3	CTCF	chr19:36135700-36135850	AoAF	blood vessel:	n/a	n/a
4	MAX	chr19:36133964-36136330	A549	lung:	n/a	chr19:36136218-36136228 chr19:36136218-36136227 chr19:36134750-36134760
5	MAX	chr19:36135154-36135826	GM12878	blood:	n/a	n/a
6	CTCF	chr19:36135780-36135930	A549	lung:	n/a	n/a
7	MAX	chr19:36135288-36135953	SK-N-SH	brain:	n/a	n/a
8	REST	chr19:36135236-36135886	HL-60	blood:	n/a	chr19:36135871-36135884 chr19:36135349-36135359 chr19:36135434-36135447
9	POLR2A	chr19:36135018-36136109	GM15510	blood:	n/a	n/a
10	E2F6	chr19:36135187-36135941	A549	lung:	n/a	chr19:36135797-36135808 chr19:36135795-36135809
11	MYC	chr19:36135217-36136409	NB4	blood:	n/a	chr19:36136218-36136228 chr19:36136218-36136227
12	MYC	chr19:36135725-36135883	HepG2	liver:	n/a	n/a
13	POLR2A	chr19:36133655-36136509	HepG2	liver:	n/a	n/a
14	TAF1	chr19:36135736-36136053	H1-hESC	embryonic stem cell:	n/a	n/a
15	SREBP1	chr19:36133710-36135823	GM12878	blood:	n/a	n/a
16	MAZ	chr19:36133877-36136311	K562	blood:	n/a	chr19:36136218-36136227 chr19:36134750-36134760
17	CTCF	chr19:36135720-36135870	HA-sp	spinal cord:	n/a	n/a
18	POLR2A	chr19:36134059-36136233	GM12892	blood:	n/a	n/a
19	GTF2F1	chr19:36135550-36135943	K562	blood:	n/a	n/a
20	POLR2A	chr19:36134133-36136006	GM18951	blood:	n/a	n/a
21	GABPA	chr19:36135296-36136063	A549	lung:	n/a	n/a
22	SIN3AK20	chr19:36135371-36136298	A549	lung:	n/a	n/a
23	POLR2A	chr19:36135784-36136391	HepG2	liver:	n/a	n/a
24	POLR2A	chr19:36135117-36135815	K562	blood:	n/a	n/a
25	MXI1	chr19:36135243-36135968	Hela-S3	cervix:	n/a	n/a
26	STAT5A	chr19:36135542-36136003	GM12878	blood:	n/a	n/a
27	USF1	chr19:36135574-36135906	A549	lung:	n/a	n/a
28	POLR2A	chr19:36134978-36135954	ECC-1	luminal epithelium:	n/a	n/a
29	RCOR1	chr19:36134055-36136335	K562	blood:	n/a	n/a
30	CTCF	chr19:36135760-36135910	AG04449	skin:	n/a	n/a
31	CTCF	chr19:36135780-36135930	MCF-7	breast:	n/a	n/a
32	CTCF	chr19:36135780-36135930	AG10803	skin:	n/a	n/a
33	REST	chr19:36135196-36135850	U87	brain:	n/a	chr19:36135349-36135359 chr19:36135434-36135447
34	SIN3AK20	chr19:36135221-36135957	SK-N-SH	brain:	n/a	n/a
35	STAT5A	chr19:36135555-36135890	GM12878	blood:	n/a	n/a
36	ELF1	chr19:36135083-36136317	GM12878	blood:	n/a	chr19:36135435-36135447
37	MAX	chr19:36135319-36136100	ECC-1	luminal epithelium:	n/a	n/a
38	CTCF	chr19:36135700-36135850	HCPEpiC	choroid plexus:	n/a	n/a
39	SIN3AK20	chr19:36135451-36136244	H1-hESC	embryonic stem cell:	n/a	n/a
40	ATF3	chr19:36135357-36135912	A549	lung:	n/a	n/a
41	SIN3AK20	chr19:36135774-36136214	K562	blood:	n/a	n/a
42	CTCF	chr19:36135720-36135870	AG09309	skin:	n/a	n/a
43	SIN3A	chr19:36134093-36136704	H1-hESC	embryonic stem cell:	n/a	n/a
44	CBX3	chr19:36135267-36135989	K562	blood:	n/a	n/a
45	CTCF	chr19:36135680-36135830	NHEK	skin:	n/a	n/a
46	MAX	chr19:36134964-36135933	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr19:36133574-36136370	K562	blood:	n/a	n/a
48	BCL3	chr19:36133870-36136133	A549	lung:	n/a	chr19:36134753-36134762 chr19:36135347-36135360 chr19:36135344-36135357
49	POLR2A	chr19:36135744-36136037	GM12878	blood:	n/a	n/a
50	JUND	chr19:36133765-36135922	SK-N-SH	brain:	n/a	chr19:36135014-36135023

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:36135762-36135812	PrEC	prostate:	n/a
2	chr19:36135780-36135830	GM19239	blood:	n/a
3	chr19:36135762-36135812	GM19239	blood:	n/a
4	chr19:36135762-36135812	NHBE	bronchial:	n/a
5	chr19:36135762-36135812	Hepatocyte	liver:	n/a
6	chr19:36135762-36135812	HCM	heart:	n/a
7	chr19:36135762-36135812	Jurkat	blood:	n/a
8	chr19:36135762-36135812	GM06990	blood:	n/a
9	chr19:36135780-36135830	MCF-7	breast:	n/a
10	chr19:36135780-36135830	PrEC	prostate:	n/a
11	chr19:36135780-36135830	GM12891	blood:	n/a
12	chr19:36135762-36135812	ovcar-3	ovarian:	n/a
13	chr19:36135762-36135812	HIPEpiC	eye:	n/a
14	chr19:36135780-36135830	LNCaP	prostate:	n/a
15	chr19:36135780-36135830	NT2-D1	testis:	n/a
16	chr19:36135780-36135830	U87	brain:	n/a
17	chr19:36135780-36135830	NHDF-neo	bronchial:	n/a
18	chr19:36135762-36135812	AG10803	skin:	n/a
19	chr19:36135780-36135830	HRPEpiC	eye:	n/a
20	chr19:36135762-36135812	SKMC	muscle:	n/a
21	chr19:36135780-36135830	HUVEC	blood vessel:	n/a
22	chr19:36135762-36135812	HL-60	blood:	n/a
23	chr19:36135780-36135830	AoSMC	blood vessel:	n/a
24	chr19:36135762-36135812	HCF	heart:	n/a
25	chr19:36135780-36135830	AG04449	skin:	fetal
26	chr19:36135762-36135812	NHDF-neo	bronchial:	n/a
27	chr19:36135780-36135830	HEK293	kidney:	embryo
28	chr19:36135762-36135812	GM12878	blood:	n/a
29	chr19:36135780-36135830	SK-N-SH_RA	brain:	n/a
30	chr19:36135762-36135812	PANC-1	pancreas:	n/a
31	chr19:36135780-36135830	IMR90	lung:	fetal
32	chr19:36135762-36135812	MCF-7	breast:	n/a
33	chr19:36135780-36135830	AG04450	lung:	fetal
34	chr19:36135762-36135812	SK-N-MC	brain:	n/a
35	chr19:36135762-36135812	RPTEC	kidney:	n/a
36	chr19:36135780-36135830	PANC-1	pancreas:	n/a
37	chr19:36135762-36135812	SK-N-SH	brain:	n/a
38	chr19:36135780-36135830	SAEC	small airway:	n/a
39	chr19:36135780-36135830	GM12892	blood:	n/a
40	chr19:36135780-36135830	HCF	heart:	n/a
41	chr19:36135780-36135830	CMK	blood:	n/a
42	chr19:36135780-36135830	NB4	blood:	n/a
43	chr19:36135762-36135812	PFSK-1	brain:	n/a
44	chr19:36135780-36135830	HL-60	blood:	n/a
45	chr19:36135762-36135812	NB4	blood:	n/a
46	chr19:36135780-36135830	T-47D	breast:	n/a
47	chr19:36135762-36135812	H1-hESC	embryonic stem cell:	embryo
48	chr19:36135762-36135812	HCT-116	colon:	n/a
49	chr19:36135762-36135812	HEK293	kidney:	embryo
50	chr19:36135762-36135812	LNCaP	prostate:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:36048459..36050567-chr19:36133641..36135941,2	K562	blood:
2	chr19:36118103..36121861-chr19:36131558..36136331,8	MCF-7	breast:
3	chr19:36134320..36136453-chr19:36390020..36392248,2	MCF-7	breast:
4	chr19:36133592..36136218-chr19:36207471..36210079,2	MCF-7	breast:
5	chr19:35758925..35762628-chr19:36133039..36136228,4	MCF-7	breast:
6	chr19:36133563..36135897-chr19:36163303..36166624,3	K562	blood:
7	chr19:36118147..36121531-chr19:36133247..36136800,5	MCF-7	breast:
8	chr19:36134594..36136863-chr19:36204020..36205921,2	K562	blood:
9	chr19:36133481..36135868-chr19:36206189..36210381,3	K562	blood:
10	chr19:36133996..36135897-chr19:36164152..36166624,2	K562	blood:
11	chr19:36035899..36038196-chr19:36134642..36137047,3	K562	blood:

No data

Variant related genes	Relation type
COX6B1	TF binding region
COX6B1	CpG island
ENSG00000105677	Chromatin interaction
ENSG00000236144	Chromatin interaction
ENSG00000105698	Chromatin interaction
ENSG00000272333	Chromatin interaction
ENSG00000167604	Chromatin interaction
ENSG00000226510	Chromatin interaction
ENSG00000011590	Chromatin interaction
ENSG00000105675	Chromatin interaction
ENSG00000126254	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10410294	0.86[CHB][hapmap]
rs10415676	0.82[ASN][1000 genomes]
rs10439089	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12461025	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1858844	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1989801	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285413	0.81[CEU][hapmap];0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs3814983	0.81[CEU][hapmap];0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs3826999	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4447555	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8100735	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8106576	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8107941	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8113090	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9304873	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv911629	chr19:36122886-36136449	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36132400-36136200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr19:36133400-36136600	Flanking Active TSS	Dnd41	blood
3	chr19:36133600-36136200	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr19:36133800-36135800	Active TSS	Rectal Smooth Muscle	rectum
5	chr19:36133800-36136200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr19:36133800-36136400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:36133800-36136400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:36133800-36136400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:36133800-36136400	Flanking Active TSS	Fetal Muscle Leg	muscle
10	chr19:36134000-36136000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:36134000-36136000	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr19:36134000-36136000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr19:36134000-36136000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr19:36134000-36136000	Active TSS	Colon Smooth Muscle	Colon
15	chr19:36134000-36136000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr19:36134000-36136000	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr19:36134000-36136000	Flanking Active TSS	HMEC	breast
18	chr19:36134000-36136000	Active TSS	HSMM	muscle
19	chr19:36134000-36136200	Active TSS	H1 Cell Line	embryonic stem cell
20	chr19:36134000-36136200	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr19:36134000-36136200	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr19:36134000-36136200	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr19:36134000-36136200	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr19:36134000-36136200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr19:36134000-36136200	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr19:36134000-36136200	Active TSS	Brain Anterior Caudate	brain
27	chr19:36134000-36136200	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr19:36134000-36136200	Active TSS	Brain Substantia Nigra	brain
29	chr19:36134000-36136200	Active TSS	Gastric	stomach
30	chr19:36134000-36136200	Active TSS	Ovary	ovary
31	chr19:36134000-36136200	Active TSS	Pancreas	Pancrea
32	chr19:36134000-36136200	Active TSS	Right Atrium	heart
33	chr19:36134000-36136400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr19:36134000-36136400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr19:36134000-36136400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr19:36134000-36136400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr19:36134000-36136400	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr19:36134000-36136400	Active TSS	Esophagus	oesophagus
39	chr19:36134000-36136400	Active TSS	Psoas Muscle	Psoas
40	chr19:36134000-36136600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr19:36134200-36135800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:36134200-36135800	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr19:36134200-36135800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr19:36134200-36135800	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr19:36134200-36135800	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr19:36134200-36135800	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr19:36134200-36135800	Active TSS	Fetal Intestine Large	intestine
48	chr19:36134200-36135800	Active TSS	Fetal Intestine Small	intestine
49	chr19:36134200-36135800	Active TSS	Lung	lung
50	chr19:36134200-36135800	Active TSS	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links