Variant report

Variant	rs8107941
Chromosome Location	chr19:36107091-36107092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:36106963-36107174	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:36106418..36107940-chr19:36120636..36123625,2	MCF-7	breast:
2	chr19:36103494..36107429-chr19:36109770..36112878,4	MCF-7	breast:
3	chr19:36105388..36109287-chr19:36131670..36134423,3	MCF-7	breast:
4	chr19:36105395..36107902-chr19:36112782..36114444,2	MCF-7	breast:
5	chr19:36105605..36107645-chr19:36117963..36120587,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000267626	TF binding region
HAUS5	TF binding region
ENSG00000126254	Chromatin interaction
ENSG00000105672	Chromatin interaction
ENSG00000249115	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10410294	0.84[ASN][1000 genomes]
rs10415676	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10439089	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12461025	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1858844	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1989801	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2285413	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3814983	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3826999	0.81[ASN][1000 genomes]
rs4447555	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6510501	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs739453	0.83[ASN][1000 genomes]
rs8100735	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8106576	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8113090	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9304873	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36104200-36107600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:36104200-36109200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:36104200-36118800	Weak transcription	Left Ventricle	heart
4	chr19:36104200-36119000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr19:36104200-36119000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:36104200-36119000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr19:36104200-36119000	Weak transcription	Colonic Mucosa	Colon
8	chr19:36104200-36119000	Weak transcription	Psoas Muscle	Psoas
9	chr19:36104200-36119000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr19:36104200-36119000	Weak transcription	HSMMtube	muscle
11	chr19:36104200-36119200	Weak transcription	Aorta	Aorta
12	chr19:36104400-36107400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr19:36104400-36107600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr19:36104400-36107600	Weak transcription	HepG2	liver
15	chr19:36104400-36107600	Weak transcription	NHEK	skin
16	chr19:36104400-36107800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr19:36104400-36107800	Weak transcription	Fetal Kidney	kidney
18	chr19:36104400-36108000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr19:36104400-36109000	Weak transcription	Right Ventricle	heart
20	chr19:36104400-36111000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr19:36104400-36118800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr19:36104400-36118800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr19:36104400-36118800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr19:36104400-36118800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr19:36104400-36119000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr19:36104400-36119000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr19:36104400-36119000	Weak transcription	Colon Smooth Muscle	Colon
28	chr19:36104400-36119000	Weak transcription	Small Intestine	intestine
29	chr19:36104400-36119000	Weak transcription	HSMM	muscle
30	chr19:36104400-36119000	Weak transcription	HUVEC	blood vessel
31	chr19:36104400-36119000	Weak transcription	NHDF-Ad	bronchial
32	chr19:36104400-36119000	Weak transcription	Osteobl	bone
33	chr19:36104400-36119200	Weak transcription	NH-A	brain
34	chr19:36104600-36110600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:36104600-36111200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr19:36104600-36114200	Strong transcription	Fetal Intestine Small	intestine
37	chr19:36104800-36107800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr19:36104800-36107800	Weak transcription	Pancreas	Pancrea
39	chr19:36104800-36108400	Weak transcription	HMEC	breast
40	chr19:36104800-36113800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr19:36104800-36114000	Strong transcription	Fetal Stomach	stomach
42	chr19:36104800-36119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:36104800-36119000	Weak transcription	K562	blood
44	chr19:36104800-36119200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr19:36104800-36119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr19:36105000-36107800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr19:36105000-36111200	Weak transcription	Hela-S3	cervix
48	chr19:36105000-36114800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr19:36105000-36114800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr19:36105000-36114800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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