Variant report

Variant	rs9304873
Chromosome Location	chr19:36101795-36101796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36047785..36049380-chr19:36101494..36103619,2	K562	blood:

Variant related genes	Relation type
ENSG00000105675	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10410294	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10415676	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10439089	0.84[ASN][1000 genomes]
rs12461025	0.85[ASN][1000 genomes]
rs1858844	0.81[ASN][1000 genomes]
rs1989801	0.82[ASN][1000 genomes]
rs2285413	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3814983	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3826999	0.91[ASN][1000 genomes]
rs6510501	0.80[ASN][1000 genomes]
rs8106576	0.84[ASN][1000 genomes]
rs8107941	0.86[ASN][1000 genomes]
rs8113090	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36096200-36102800	Weak transcription	Stomach Mucosa	stomach
2	chr19:36099200-36103200	Enhancers	Primary B cells from peripheral blood	blood
3	chr19:36100200-36101800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr19:36100200-36102200	Enhancers	Primary B cells from cord blood	blood
5	chr19:36100200-36102200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr19:36100400-36101800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr19:36100400-36101800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr19:36100400-36102400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr19:36101000-36102800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr19:36101000-36102800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr19:36101000-36103000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr19:36101000-36103000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr19:36101000-36103000	Weak transcription	HMEC	breast
14	chr19:36101200-36102000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr19:36101200-36102800	Weak transcription	Lung	lung
16	chr19:36101200-36103000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr19:36101200-36103000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:36101200-36103000	Weak transcription	K562	blood
19	chr19:36101200-36103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:36101200-36103200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr19:36101200-36103200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr19:36101400-36101800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr19:36101400-36101800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr19:36101400-36101800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr19:36101400-36102800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr19:36101400-36102800	Weak transcription	Spleen	Spleen
27	chr19:36101400-36103000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr19:36101400-36103000	Weak transcription	Fetal Thymus	thymus
29	chr19:36101400-36103200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr19:36101600-36102800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr19:36101600-36102800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr19:36101600-36102800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr19:36101600-36102800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr19:36101600-36102800	Weak transcription	GM12878-XiMat	blood
35	chr19:36101600-36103000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:36101600-36103200	Weak transcription	Primary T cells from cord blood	blood
37	chr19:36101600-36103400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr19:36101600-36103600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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