Variant report

Variant	rs6511071
Chromosome Location	chr19:20162695-20162696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19886225..19889076-chr19:20160261..20164492,4	MCF-7	breast:
2	chr19:20158142..20160017-chr19:20161211..20163624,2	MCF-7	breast:
3	chr19:20159294..20161641-chr19:20161675..20163278,2	MCF-7	breast:
4	chr19:20153292..20157209-chr19:20159968..20162896,6	MCF-7	breast:
5	chr19:20161148..20163684-chr19:20228612..20230172,2	MCF-7	breast:
6	chr19:20150205..20157347-chr19:20159192..20163449,8	MCF-7	breast:
7	chr19:20160443..20163353-chr19:20178782..20180876,2	MCF-7	breast:
8	chr19:19886850..19889020-chr19:20162387..20164184,2	MCF-7	breast:
9	chr19:19887367..19888020-chr19:20162266..20162852,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266904	Chromatin interaction
ENSG00000197124	Chromatin interaction
ENSG00000267419	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10404484	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10407270	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10408129	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10409512	0.81[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap]
rs10409614	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10409629	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs10410313	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10416812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10418140	0.85[EUR][1000 genomes]
rs10419467	0.87[EUR][1000 genomes]
rs10420011	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.80[TSI][hapmap];0.88[EUR][1000 genomes]
rs10420124	0.93[CEU][hapmap];0.95[CHB][hapmap];0.88[EUR][1000 genomes]
rs10420900	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10423526	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10423976	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11085293	0.88[EUR][1000 genomes]
rs11085294	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11085295	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11085296	0.83[ASN][1000 genomes]
rs1121387	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1121388	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11668688	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11671950	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12463237	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12975130	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12976158	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12977326	0.90[EUR][1000 genomes]
rs12983056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12983683	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1319479	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes]
rs17767339	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1860939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1860940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1860941	0.86[YRI][hapmap]
rs1974650	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1974651	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2041606	0.89[EUR][1000 genomes]
rs2110124	0.89[EUR][1000 genomes]
rs2110125	0.89[EUR][1000 genomes]
rs2159921	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2215721	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2286920	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286921	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286922	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2286923	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2335888	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[EUR][1000 genomes]
rs2335889	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[EUR][1000 genomes]
rs2335890	0.89[EUR][1000 genomes]
rs2335892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2335896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2335897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs258575	0.81[CEU][hapmap];0.91[CHB][hapmap]
rs258579	0.81[CEU][hapmap]
rs2878552	0.89[EUR][1000 genomes]
rs4563152	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[EUR][1000 genomes]
rs4809023	0.91[EUR][1000 genomes]
rs5013556	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6511066	0.93[CEU][hapmap]
rs6511067	0.82[EUR][1000 genomes]
rs6511069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6511070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6511072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6511073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6511074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6511075	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6511076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71944124	0.90[ASN][1000 genomes]
rs7246955	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.81[MEX][hapmap];0.88[MKK][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7247476	0.90[EUR][1000 genomes]
rs7247483	0.87[EUR][1000 genomes]
rs7247572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.81[MEX][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7247818	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[EUR][1000 genomes]
rs7248117	0.93[EUR][1000 genomes]
rs7248186	0.93[EUR][1000 genomes]
rs7251276	0.89[EUR][1000 genomes]
rs7256046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8101213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8101367	0.88[EUR][1000 genomes]
rs8103855	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8104703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8104933	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8106847	0.83[ASW][hapmap];0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs8112738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8182568	0.80[EUR][1000 genomes]
rs9304964	0.80[EUR][1000 genomes]
rs9304965	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[EUR][1000 genomes]
rs963380	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap]
rs993044	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519535	chr19:19871250-20595412	Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
2	esv3319016	chr19:19917475-20819154	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
3	esv3319017	chr19:19917475-20819154	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
4	nsv1061846	chr19:19946927-20595412	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
5	esv3390957	chr19:19965887-20819154	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
6	nsv869122	chr19:19969851-20595412	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv1057569	chr19:19973268-20193556	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1059158	chr19:19973489-20576161	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
9	nsv911319	chr19:20025940-20170214	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv870354	chr19:20043821-20576175	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
11	nsv1062018	chr19:20053658-20193556	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1066004	chr19:20053658-20592867	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
13	nsv543932	chr19:20053658-20592867	Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
14	nsv1066564	chr19:20056348-20595412	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
15	nsv1066375	chr19:20061084-20574512	Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
16	nsv543934	chr19:20061084-20574512	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
17	esv3501977	chr19:20072180-20193556	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	esv3501978	chr19:20072180-20193556	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv1057309	chr19:20072886-20595412	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
20	nsv578801	chr19:20084681-20595412	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
21	nsv1055694	chr19:20088866-20595412	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
22	nsv578802	chr19:20091702-20595412	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
23	nsv1066970	chr19:20093894-20164335	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv1064400	chr19:20101052-20595412	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
25	nsv911322	chr19:20111134-20193556	Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
26	nsv1066045	chr19:20142912-20179084	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
27	nsv911325	chr19:20151257-21071548	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
28	nsv9672	chr19:20162638-20163700	Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs6511071	ZNF682	cis	parietal	SCAN
rs6511071	ZNF682	cis	cerebellum	SCAN
rs6511071	ZNF506	cis	cerebellum	SCAN
rs6511071	ZNF100	cis	cerebellum	SCAN
rs6511071	ZNF506	Cis_1M	lymphoblastoid	RTeQTL
rs6511071	ZNF682	cis	lymphoblastoid	seeQTL
rs6511071	PLVAP	cis	cerebellum	SCAN
rs6511071	F2RL3	cis	parietal	SCAN
rs6511071	ZNF682	cis	Muscle Skeletal	GTEx
rs6511071	ATP13A1	cis	parietal	SCAN
rs6511071	SAGE1	trans	parietal	SCAN
rs6511071	ZNF93	cis	cerebellum	SCAN
rs6511071	ZNF682	cis	Lymphoblastoid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:20162000-20162800	Active TSS	Primary B cells from cord blood	blood
2	chr19:20162000-20163000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
3	chr19:20162000-20164000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr19:20162200-20163200	Active TSS	Stomach Smooth Muscle	stomach
5	chr19:20162200-20163400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:20162200-20163400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr19:20162200-20163400	Active TSS	Primary T cells from cord blood	blood
8	chr19:20162200-20163400	Active TSS	Muscle Satellite Cultured Cells	--
9	chr19:20162200-20163400	Active TSS	Brain Cingulate Gyrus	brain
10	chr19:20162200-20163400	Active TSS	Brain Hippocampus Middle	brain
11	chr19:20162200-20163400	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr19:20162200-20163400	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr19:20162200-20163400	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr19:20162200-20163400	Active TSS	Right Ventricle	heart
15	chr19:20162200-20163400	Active TSS	HSMMtube	muscle
16	chr19:20162200-20163400	Active TSS	NH-A	brain
17	chr19:20162200-20163400	Active TSS	Osteobl	bone
18	chr19:20162200-20163800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr19:20162200-20163800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr19:20162200-20163800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:20162200-20164000	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr19:20162200-20164000	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr19:20162200-20164000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr19:20162200-20164000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:20162200-20164000	Active TSS	Brain Germinal Matrix	brain
26	chr19:20162200-20164000	Active TSS	NHDF-Ad	bronchial
27	chr19:20162400-20162800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr19:20162400-20162800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr19:20162400-20162800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr19:20162400-20162800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr19:20162400-20162800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr19:20162400-20162800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr19:20162400-20162800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr19:20162400-20162800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr19:20162400-20162800	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr19:20162400-20162800	Flanking Active TSS	Fetal Muscle Leg	muscle
37	chr19:20162400-20163000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr19:20162400-20163200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr19:20162400-20163200	Active TSS	Liver	Liver
40	chr19:20162400-20163200	Active TSS	Placenta Amnion	Placenta Amnion
41	chr19:20162400-20163400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr19:20162400-20163400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr19:20162400-20163400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr19:20162400-20163400	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr19:20162400-20163400	Active TSS	Primary T cells fromperipheralblood	blood
46	chr19:20162400-20163400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr19:20162400-20163400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr19:20162400-20163400	Active TSS	Brain Anterior Caudate	brain
49	chr19:20162400-20163400	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr19:20162400-20163400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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