Variant report

Variant rs6511162
Chromosome Location chr19:20969680-20969681
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20959600-20978200 Weak transcription Spleen Spleen
2 chr19:20959800-20970400 Weak transcription Gastric stomach
3 chr19:20959800-20978400 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr19:20960000-20975600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr19:20960000-20976200 Weak transcription H9 Cell Line embryonic stem cell
6 chr19:20960000-20976600 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr19:20960000-20977600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr19:20960000-20977600 Weak transcription Brain Hippocampus Middle brain
9 chr19:20960000-20978000 Weak transcription Brain Inferior Temporal Lobe brain
10 chr19:20960000-20978200 Weak transcription Pancreas Pancrea
11 chr19:20960000-20978400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr19:20960000-20978400 Weak transcription Brain Cingulate Gyrus brain
13 chr19:20960000-20978400 Weak transcription HSMM muscle
14 chr19:20960000-20983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr19:20960000-20987600 Weak transcription Brain Substantia Nigra brain
16 chr19:20960000-20987800 Weak transcription Placenta Amnion Placenta Amnion
17 chr19:20960200-20979600 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr19:20960200-20979600 Weak transcription NH-A brain
19 chr19:20960200-20987200 Weak transcription Colon Smooth Muscle Colon
20 chr19:20960200-20990400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr19:20960800-20976600 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr19:20961000-20973600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
23 chr19:20961200-20989600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr19:20962400-20978400 Weak transcription Osteobl bone
25 chr19:20964000-20970200 Weak transcription Ovary ovary
26 chr19:20964000-20975600 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr19:20965000-20975400 ZNF genes & repeats Dnd41 blood
28 chr19:20966000-20970600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
29 chr19:20966400-20970600 ZNF genes & repeats Primary Natural Killer cells fromperipheralblood blood
30 chr19:20966400-20970800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
31 chr19:20966400-20971000 ZNF genes & repeats Brain Germinal Matrix brain
32 chr19:20966400-20985400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr19:20966600-20969800 Strong transcription H1 Cell Line embryonic stem cell
34 chr19:20966600-20969800 ZNF genes & repeats Primary T cells from cord blood blood
35 chr19:20966600-20970600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr19:20966600-20970800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr19:20966600-20971400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr19:20966600-20971400 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
39 chr19:20966600-20973400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
40 chr19:20966600-20973600 ZNF genes & repeats Primary hematopoietic stem cells blood
41 chr19:20966800-20978600 Weak transcription Placenta Placenta
42 chr19:20967200-20972200 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
43 chr19:20967600-20978200 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr19:20967800-20969800 ZNF genes & repeats Fetal Intestine Small intestine
45 chr19:20967800-20978400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr19:20968000-20970800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
47 chr19:20968000-20977800 Weak transcription Fetal Kidney kidney
48 chr19:20968000-20978400 Weak transcription HepG2 liver
49 chr19:20968200-20970200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr19:20968200-20970400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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