Variant report

Variant	rs6532864
Chromosome Location	chr4:78096188-78096189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78085870..78089937-chr4:78095551..78099001,4	MCF-7	breast:
2	chr4:78089133..78091106-chr4:78093966..78096748,3	MCF-7	breast:
3	chr4:78091335..78093666-chr4:78093856..78096370,3	K562	blood:
4	chr4:78075731..78079690-chr4:78094902..78097622,3	MCF-7	breast:
5	chr4:77994706..77997285-chr4:78095427..78097640,2	K562	blood:
6	chr4:78093090..78096475-chr4:78097818..78101678,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction
ENSG00000138764	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17002420	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4150035	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59392243	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60089254	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6814525	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7656746	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78084600-78097800	Weak transcription	Esophagus	oesophagus
2	chr4:78084600-78102200	Weak transcription	Spleen	Spleen
3	chr4:78085800-78096600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:78087400-78100600	Weak transcription	Hela-S3	cervix
5	chr4:78088800-78096800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:78089400-78108000	Weak transcription	Left Ventricle	heart
7	chr4:78090400-78109800	Weak transcription	Gastric	stomach
8	chr4:78090800-78098000	Weak transcription	Fetal Brain Male	brain
9	chr4:78091000-78097600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:78091600-78098000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:78091800-78105000	Weak transcription	Adipose Nuclei	Adipose
12	chr4:78092000-78097800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:78092000-78099000	Enhancers	HMEC	breast
14	chr4:78092200-78096400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:78092200-78096400	Weak transcription	Aorta	Aorta
16	chr4:78092200-78097600	Weak transcription	Fetal Intestine Large	intestine
17	chr4:78092200-78097600	Weak transcription	Fetal Intestine Small	intestine
18	chr4:78092200-78097800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:78092200-78099200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:78092200-78106000	Weak transcription	Primary T cells from cord blood	blood
21	chr4:78092400-78096200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:78092400-78096200	Weak transcription	Brain Germinal Matrix	brain
23	chr4:78092400-78096200	Weak transcription	Fetal Brain Female	brain
24	chr4:78092400-78096400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:78092400-78097600	Weak transcription	Fetal Stomach	stomach
26	chr4:78092400-78097800	Weak transcription	Fetal Lung	lung
27	chr4:78092400-78097800	Weak transcription	Placenta	Placenta
28	chr4:78092400-78098200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr4:78092400-78098400	Weak transcription	Fetal Kidney	kidney
30	chr4:78092400-78100200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr4:78092400-78100400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:78092400-78100800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr4:78092600-78097800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr4:78092600-78100800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:78092600-78108600	Weak transcription	Thymus	Thymus
36	chr4:78093000-78098000	Enhancers	HSMM	muscle
37	chr4:78093200-78096200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:78093200-78096400	Weak transcription	Fetal Thymus	thymus
39	chr4:78094400-78097600	Enhancers	NHEK	skin
40	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
41	chr4:78094600-78096800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:78094600-78097000	Enhancers	Fetal Muscle Leg	muscle
43	chr4:78095400-78096800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:78095400-78101200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr4:78095600-78096800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
46	chr4:78095600-78097200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
47	chr4:78095800-78096200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:78095800-78097000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr4:78095800-78097600	Weak transcription	HSMMtube	muscle
50	chr4:78095800-78097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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