Variant report

Variant	rs7656746
Chromosome Location	chr4:78104817-78104818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1477312	0.81[EUR][1000 genomes]
rs17002420	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4150035	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4150063	0.81[EUR][1000 genomes]
rs59392243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60089254	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6532864	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6814525	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78089400-78108000	Weak transcription	Left Ventricle	heart
2	chr4:78090400-78109800	Weak transcription	Gastric	stomach
3	chr4:78091800-78105000	Weak transcription	Adipose Nuclei	Adipose
4	chr4:78092200-78106000	Weak transcription	Primary T cells from cord blood	blood
5	chr4:78092600-78108600	Weak transcription	Thymus	Thymus
6	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:78096800-78108200	Weak transcription	Fetal Brain Female	brain
8	chr4:78099000-78108000	Weak transcription	Brain Germinal Matrix	brain
9	chr4:78099400-78109800	Weak transcription	Fetal Stomach	stomach
10	chr4:78099400-78111200	Weak transcription	NHEK	skin
11	chr4:78100000-78108000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:78100200-78108000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:78100800-78105600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:78101000-78108000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:78101200-78108000	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:78101200-78109600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:78104800-78105600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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