Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11943130	1.00[CEU][hapmap]
rs1477312	0.81[EUR][1000 genomes]
rs17002482	1.00[MEX][hapmap]
rs2009261	1.00[MEX][hapmap]
rs41375744	1.00[MEX][hapmap]
rs41495248	1.00[MEX][hapmap]
rs4150035	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4150063	1.00[CEU][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs4252775	1.00[MEX][hapmap]
rs4252934	1.00[MEX][hapmap]
rs4557282	1.00[MEX][hapmap]
rs59392243	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60089254	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6532864	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6814525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6817626	1.00[MEX][hapmap]
rs6818356	1.00[MEX][hapmap]
rs6840204	1.00[MEX][hapmap]
rs7656746	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7667891	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78089400-78108000	Weak transcription	Left Ventricle	heart
2	chr4:78090400-78109800	Weak transcription	Gastric	stomach
3	chr4:78092600-78108600	Weak transcription	Thymus	Thymus
4	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
5	chr4:78096800-78108200	Weak transcription	Fetal Brain Female	brain
6	chr4:78099000-78108000	Weak transcription	Brain Germinal Matrix	brain
7	chr4:78099400-78109800	Weak transcription	Fetal Stomach	stomach
8	chr4:78099400-78111200	Weak transcription	NHEK	skin
9	chr4:78100000-78108000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:78100200-78108000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:78101000-78108000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:78101200-78108000	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:78101200-78109600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:78106400-78108400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:78107000-78107200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:78107000-78107400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:78107000-78108200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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